View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1381_low_18 (Length: 277)
Name: NF1381_low_18
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1381_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 50 - 263
Target Start/End: Original strand, 51418276 - 51418489
Alignment:
| Q |
50 |
ataaacaaccaacggtggtaattgagaaagtgagcaaaactgtgcgtttactaggttttctgatacaaaacggtgtctctaagagtcatagagttatgca |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51418276 |
ataaacaaccaacggtggtaattgagaaagtgagcaaaactgtgcgtttactaggttttctgatacaaaacggtgtctctaagagtcatagagttatgca |
51418375 |
T |
|
| Q |
150 |
ggatatgcaagaagtgatgaagagaggaaaaaacatagggaaagcactgaacaacgtgatggtgaagcaccatgaagcactcacgtgccgtccacgtgat |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51418376 |
ggatatgcaagaagtgatgaagagaggaaaaaacatagggaaagcactgaacaacgtgatggtgaagcaccatgaagcactcacgtgccgtccacgtgat |
51418475 |
T |
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| Q |
250 |
gctgatatgtattt |
263 |
Q |
| |
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|||||||||||||| |
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| T |
51418476 |
gctgatatgtattt |
51418489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 50 - 271
Target Start/End: Original strand, 51413223 - 51413444
Alignment:
| Q |
50 |
ataaacaaccaacggtggtaattgagaaagtgagcaaaactgtgcgtttactaggttttctgatacaaaacggtgtctctaagagtcatagagttatgca |
149 |
Q |
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|||| |||||||||||||| ||||||||| |||||||||| ||||||||||||||||| || ||||||||||||||||||||||| | ||||| || || |
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| T |
51413223 |
ataaccaaccaacggtggtgattgagaaattgagcaaaacggtgcgtttactaggtttcatgttacaaaacggtgtctctaagagtaacagagtgataca |
51413322 |
T |
|
| Q |
150 |
ggatatgcaagaagtgatgaagagaggaaaaaacatagggaaagcactgaacaacgtgatggtgaagcaccatgaagcactcacgtgccgtccacgtgat |
249 |
Q |
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| T |
51413323 |
agatatgcaagaagtgatgaagagagggaaaaacatagggaaagcattgaacagcgtgatggtgaagcaccatgaagcactcacgtgccgaccacgtgat |
51413422 |
T |
|
| Q |
250 |
gctgatatgtatttcatctcac |
271 |
Q |
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||||||||||||||||| |||| |
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| T |
51413423 |
gctgatatgtatttcatttcac |
51413444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 214 - 264
Target Start/End: Original strand, 29323690 - 29323740
Alignment:
| Q |
214 |
aagcaccatgaagcactcacgtgccgtccacgtgatgctgatatgtatttc |
264 |
Q |
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|||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29323690 |
aagcaccacgaagcactcatgtgccgtccacgtgatgctgatatgtatttc |
29323740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 29323651 - 29323695
Alignment:
| Q |
152 |
atatgcaagaagtgatgaagagaggaaaaaacatagggaaagcac |
196 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
29323651 |
atatgcaagaagtgatgaagagaggtaaaaatatagggaaagcac |
29323695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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