View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1381_low_22 (Length: 264)
Name: NF1381_low_22
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1381_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 143 - 238
Target Start/End: Original strand, 16460328 - 16460423
Alignment:
| Q |
143 |
cctgaacagccaacaagggtctatgcatgccttccaaattcaagattccactataaggaatcaattccttcaaaatggcactactttcagcaacag |
238 |
Q |
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| T |
16460328 |
cctgaacagccaacaagggtctatgcatgccttccaaattcaagattccactataaggaatcaattccttcaaaatggcactactttcagcaacag |
16460423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 16460213 - 16460251
Alignment:
| Q |
28 |
gaacataaattaatgtaacaacaaatttcaaaatttaat |
66 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
16460213 |
gaacataaattaatgtaacaacaaatttcaaaatttaat |
16460251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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