View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1381_low_24 (Length: 257)

Name: NF1381_low_24
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1381_low_24
NF1381_low_24
[»] chr2 (7 HSPs)
chr2 (2-228)||(38710959-38711197)
chr2 (58-228)||(38710890-38711072)
chr2 (56-122)||(38710939-38711005)
chr2 (133-228)||(38711154-38711249)
chr2 (56-113)||(38710879-38710936)
chr2 (146-222)||(38710827-38710903)
chr2 (76-116)||(38711209-38711249)
[»] chr8 (2 HSPs)
chr8 (170-223)||(39704825-39704878)
chr8 (58-122)||(39704953-39705017)


Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 38711197 - 38710959
Alignment:
Q  2 catcacaatcacctgcttggaaggctccttcgccaagtgctaccagcaagactgctccaacacaatcaccgatttggaatgctccttcaccaagtgctac 101  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38711197 catcacaatcacctgcttggaaggctccttcaccaagtgctaccagcaagactgctccaacacaatcaccggtttggaatgctccttcaccaagtgctac 38711098  T
Q  102 cggctggactgctcccg------------cacaatcaccgacttggagtgcttcttcaccaagtgccaccggttggactactccggcacactctccaaca 189  Q
    |||||||||||||||||            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  38711097 cggctggactgctcccgcacactccccaacacaatcaccgacttggagtgcttcttcaccaagtgctaccggttggactactccgacacactctccaaca 38710998  T
Q  190 caatcaccggcttggcatgctccttcaccaagtgctacc 228  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38710997 caatcaccggcttggcatgctccttcaccaagtgctacc 38710959  T

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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 58 - 228
Target Start/End: Complemental strand, 38711072 - 38710890
Alignment:
Q  58 ccaacacaatcaccgatttggaatgctccttcaccaagtgctaccggctggactgctcccgcaca------------atcaccgacttggagtgcttctt 145  Q
    |||||||||||||||| ||||| |||| ||||||||||||||||||| |||||| ||||  ||||            ||||||| |||||  |||| |||    
T  38711072 ccaacacaatcaccgacttggagtgcttcttcaccaagtgctaccggttggactactccgacacactctccaacacaatcaccggcttggcatgctcctt 38710973  T
Q  146 caccaagtgccaccggttggactactccggcacactctccaacacaatcaccggcttggcatgctccttcaccaagtgctacc 228  Q
    |||||||||| |||||||||||| |||| ||||| ||||||||| ||||| ||| |||| |||||||  ||||||||||||||    
T  38710972 caccaagtgctaccggttggactgctcctgcacattctccaacaaaatcatcgggttggaatgctccgacaccaagtgctacc 38710890  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 38711005 - 38710939
Alignment:
Q  56 ctccaacacaatcaccgatttggaatgctccttcaccaagtgctaccggctggactgctcccgcaca 122  Q
    |||||||||||||||||  |||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  38711005 ctccaacacaatcaccggcttggcatgctccttcaccaagtgctaccggttggactgctcctgcaca 38710939  T

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Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 228
Target Start/End: Complemental strand, 38711249 - 38711154
Alignment:
Q  133 tggagtgcttcttcaccaagtgccaccggttggactactccggcacactctccaacacaatcaccggcttggcatgctccttcaccaagtgctacc 228  Q
    |||| |||| ||||||||||||| | |||||||| | ||||  ||||||| ||| |||||||||| |||||| | |||||||||||||||||||||    
T  38711249 tggaatgctccttcaccaagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttggaaggctccttcaccaagtgctacc 38711154  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 38710936 - 38710879
Alignment:
Q  56 ctccaacacaatcaccgatttggaatgctccttcaccaagtgctaccggctggactgc 113  Q
    |||||||| ||||| ||  ||||||||||||  |||||||||||||||| ||||||||    
T  38710936 ctccaacaaaatcatcgggttggaatgctccgacaccaagtgctaccggttggactgc 38710879  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 222
Target Start/End: Complemental strand, 38710903 - 38710827
Alignment:
Q  146 caccaagtgccaccggttggactactccggcacactctccaacacaatcaccggcttggcatgctccttcaccaagt 222  Q
    |||||||||| |||||||||||| | ||  |||| |||||| |||||||| | |||||| |||||||  ||||||||    
T  38710903 caccaagtgctaccggttggactgcccctacacattctccagcacaatcatcagcttggaatgctccgacaccaagt 38710827  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 38711249 - 38711209
Alignment:
Q  76 tggaatgctccttcaccaagtgctaccggctggactgctcc 116  Q
    ||||||||||||||||||||||||| ||| |||| ||||||    
T  38711249 tggaatgctccttcaccaagtgctatcggttggaatgctcc 38711209  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 223
Target Start/End: Original strand, 39704825 - 39704878
Alignment:
Q  170 ctccggcacactctccaacacaatcaccggcttggcatgctccttcaccaagtg 223  Q
    ||||||||| ||| ||||||||| ||||||||||| ||||||| ||| ||||||    
T  39704825 ctccggcacgctccccaacacaaccaccggcttggaatgctccctcatcaagtg 39704878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 39704953 - 39705017
Alignment:
Q  58 ccaacacaatcaccgatttggaatgctccttcaccaagtgctaccggctggactgctcccgcaca 122  Q
    ||||||||| ||||   |||||||||||| |||||||||||||  | |||||||||||| |||||    
T  39704953 ccaacacaaccaccagcttggaatgctccctcaccaagtgctattgtctggactgctccggcaca 39705017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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