View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1381_low_26 (Length: 251)
Name: NF1381_low_26
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1381_low_26 |
| |
|
[»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 23 - 251
Target Start/End: Original strand, 45708866 - 45709097
Alignment:
Q |
23 |
atcatcatttcccacccattgatagtcatactgcaaaaccaattaaataaattcagtacattagtcaccaaacttgtaaattaaactt--nnnnnnnnnn |
120 |
Q |
|
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
45708866 |
atcatcatttcccacccattgatagtcatactgcaaaaccaattaaataaattcagtacattagtcaccaaacttgtaaattaaacttaaaaaaaaaaaa |
45708965 |
T |
|
Q |
121 |
nncaaagagtactccatccttaaatataagagcacattgattaaattttattgttgatgtaattaaaataactaggagtactctttc-nnnnnnnnntat |
219 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
T |
45708966 |
aacaaagagtactccatccttaaatataagagcacattgattaaattttattgttgatgtaattaaaataactaggagtactctttcaaaaaaaagatat |
45709065 |
T |
|
Q |
220 |
taataactaggagtagtattttaataaagaaa |
251 |
Q |
|
|
|||||||||||||||||||||||||||||||| |
|
|
T |
45709066 |
taataactaggagtagtattttaataaagaaa |
45709097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 15957 times since January 2019
Visitors: 3757