View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1381_low_27 (Length: 250)
Name: NF1381_low_27
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1381_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 30 - 233
Target Start/End: Original strand, 20171390 - 20171593
Alignment:
| Q |
30 |
aaggcaacaattacaaactctttgttgatttgaggttcacttacactgtaacaaggaaataatcacaagccatcttaatgtctatgttcgtttgaattga |
129 |
Q |
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| T |
20171390 |
aaggcaacaattacaaactctttgttgatttgaggttcacttacactgtaacaaggaaataatcacaagccatcttaatgtctatgttcgtttgaattga |
20171489 |
T |
|
| Q |
130 |
gaatatttgggtcccacgtgcttacgggctagctctaataatgtacggtgtttgatcccttttcaattgcgtggaattgctgatttgtatgagtgcacgt |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
20171490 |
gaatatttgggtcccacgtgcttacgggctagctctaataatgtacggtgtttgatcccttttcaattgcgtggaattgctgatttgtacgagtgcacgt |
20171589 |
T |
|
| Q |
230 |
tgat |
233 |
Q |
| |
|
|||| |
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| T |
20171590 |
tgat |
20171593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 30 - 233
Target Start/End: Original strand, 44393100 - 44393303
Alignment:
| Q |
30 |
aaggcaacaattacaaactctttgttgatttgaggttcacttacactgtaacaaggaaataatcacaagccatcttaatgtctatgttcgtttgaattga |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44393100 |
aaggcaacaattacaaactctttgttgatttgaggttcacttacactgtaacaaggaaataatcacaagccatcttaatgtctatgttcgtttgaattga |
44393199 |
T |
|
| Q |
130 |
gaatatttgggtcccacgtgcttacgggctagctctaataatgtacggtgtttgatcccttttcaattgcgtggaattgctgatttgtatgagtgcacgt |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44393200 |
gaatatttgggtcccacgtgcttacgggctagctctaataatgtacggtgtttgatcccttttcaattgcgtggaattgctgatttgtacgagtgcacgt |
44393299 |
T |
|
| Q |
230 |
tgat |
233 |
Q |
| |
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|||| |
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|
| T |
44393300 |
tgat |
44393303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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