View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1381_low_29 (Length: 242)
Name: NF1381_low_29
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1381_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 7e-64; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 83 - 206
Target Start/End: Original strand, 2600109 - 2600232
Alignment:
| Q |
83 |
gtcaagtaatagttttaagagttcatcaaaatggaaatcttctcaatcctctcatcagcattatcttgcacttcaagtaatcaacttggaatgtgaaacc |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2600109 |
gtcaagtaatagttttaagagttcatcaaaatggaaatcttctcaatcctctcatcagcattatcttgcacttcaagtaatcaacttggaatgtgaaacc |
2600208 |
T |
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| Q |
183 |
aacataacaaaagtcataccccat |
206 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
2600209 |
aacataacaaaagtcataccccat |
2600232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 2600071 - 2600120
Alignment:
| Q |
8 |
tccaaattcaatatttccatcatcttttaccaaattttgtcaagtaatag |
57 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2600071 |
tccaaattcaatatttccatcatcttttaccaaattttgtcaagtaatag |
2600120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 2591936 - 2591976
Alignment:
| Q |
8 |
tccaaattcaatatttccatcatcttttaccaaattttgtc |
48 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||| |
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| T |
2591936 |
tccaaataaaatatttccatcatcttttaccaaattttgtc |
2591976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 130
Target Start/End: Complemental strand, 24916975 - 24916936
Alignment:
| Q |
91 |
atagttttaagagttcatcaaaatggaaatcttctcaatc |
130 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||| |
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| T |
24916975 |
atagttctaagagttcatcaaaatggaaatcttctcaatc |
24916936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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