View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1381_low_3 (Length: 444)

Name: NF1381_low_3
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1381_low_3
NF1381_low_3
[»] chr1 (6 HSPs)
chr1 (3-398)||(40689548-40689943)
chr1 (261-313)||(34714059-34714111)
chr1 (131-195)||(34710335-34710399)
chr1 (131-195)||(34713959-34714023)
chr1 (163-203)||(27509163-27509203)
chr1 (131-195)||(34406576-34406640)
[»] chr7 (2 HSPs)
chr7 (138-214)||(7687870-7687946)
chr7 (136-208)||(40243778-40243850)
[»] chr2 (2 HSPs)
chr2 (142-216)||(41234713-41234787)
chr2 (163-215)||(35505956-35506008)
[»] chr4 (1 HSPs)
chr4 (123-212)||(20926000-20926089)


Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 3 - 398
Target Start/End: Original strand, 40689548 - 40689943
Alignment:
Q  3 aggagaagcaaaggaatcatcaacaaagaacaccgatgatttagatggtggaatgatgaactacacaaaatatagcagtagaaaattcatggaagctgct 102  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689548 aggacaagcaaaggaatcatcaacaaagaacactgatgatttagatggtggaatgatgaactacacaaaatatagcagtagaaaattcatggaagctgct 40689647  T
Q  103 actttggattctggaagagctggtttctatgtttatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtc 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689648 actttggattctggaagagctggtttctatgtttatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtc 40689747  T
Q  203 acaagaaaccaaaagctttagcaattgctcaagagaaaaagcacttatatgatgatgatcaagagtttcaattcaaacccaatcataaatcaatttccct 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  40689748 acaagaaaccaaaagctttagcaattgctcaagagaaaaagcacttatatgatgatgatcaagagtttcaattcaaacccaatcataaatcaatttctct 40689847  T
Q  303 tcaattgaataacaatggtaagggaaatctacatggtggaagcaacaataacaacaagtctaaggttcatgagtgttccatttgtggttctgaatt 398  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689848 tcaattgaataacaatggtaagggaaatctacatggtggaagcaacaataacaacaagtctaaggttcatgagtgttccatttgtggttctgaatt 40689943  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 261 - 313
Target Start/End: Original strand, 34714059 - 34714111
Alignment:
Q  261 tcaagagtttcaattcaaacccaatcataaatcaatttcccttcaattgaata 313  Q
    ||||||||||||||||||| ||||| ||||||||||||||||| |||||||||    
T  34714059 tcaagagtttcaattcaaaaccaataataaatcaatttcccttaaattgaata 34714111  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 34710335 - 34710399
Alignment:
Q  131 atgtttatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccataga 195  Q
    |||| |||| ||||||||||||||||| ||||||| |||||| |||||| ||||| |||||||||    
T  34710335 atgtgtatgcatgcaaaacatgcaacaaaacattcacttcatctcaagcacttggaggccataga 34710399  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 34713959 - 34714023
Alignment:
Q  131 atgtttatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccataga 195  Q
    |||| |||| ||||||||||||||| | ||| ||| ||||||||||||| ||||| |||||||||    
T  34713959 atgtgtatgcatgcaaaacatgcaaaaaaactttcacttcatttcaagcacttggaggccataga 34714023  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 27509203 - 27509163
Alignment:
Q  163 ttcccttcatttcaagcccttggtggccatagagcaagtca 203  Q
    ||||||||||| ||||| |||||||| ||||||||||||||    
T  27509203 ttcccttcattccaagcacttggtggacatagagcaagtca 27509163  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 131 - 195
Target Start/End: Complemental strand, 34406640 - 34406576
Alignment:
Q  131 atgtttatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccataga 195  Q
    |||| |||| |||||||||||| |||| | | ||| ||||||||||||| ||||| |||||||||    
T  34406640 atgtgtatgcatgcaaaacatgtaacaaatctttcacttcatttcaagcacttggaggccataga 34406576  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 7687946 - 7687870
Alignment:
Q  138 tgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaagaaaccaa 214  Q
    |||||| |||||||| || |||  ||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||    
T  7687946 tgaatgtaaaacatgtaatagacaatttccttcatttcaagccctaggtggtcatagggcaagtcacaagaaaccaa 7687870  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 40243850 - 40243778
Alignment:
Q  136 tatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaaga 208  Q
    |||||||||||||| ||||||| || |||| | || ||||||||||||||||||||||| || || |||||||    
T  40243850 tatgaatgcaaaacgtgcaacaaaaaattctcatcttttcaagcccttggtggccatagggctagccacaaga 40243778  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 142 - 216
Target Start/End: Original strand, 41234713 - 41234787
Alignment:
Q  142 tgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaagaaaccaaaa 216  Q
    |||||||||||||||| |  |||| |||| ||||||||  | ||||||||||||||||||||||||| |||||||    
T  41234713 tgcaaaacatgcaacaaagaattctcttcttttcaagctttaggtggccatagagcaagtcacaagagaccaaaa 41234787  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 215
Target Start/End: Original strand, 35505956 - 35506008
Alignment:
Q  163 ttcccttcatttcaagcccttggtggccatagagcaagtcacaagaaaccaaa 215  Q
    |||| ||||||||||||  | ||||| ||||||||||||||||||||||||||    
T  35505956 ttccattcatttcaagcgttgggtggacatagagcaagtcacaagaaaccaaa 35506008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 212
Target Start/End: Complemental strand, 20926089 - 20926000
Alignment:
Q  123 tggtttctatgtttatgaatgcaaaacatgcaacagaacattcccttcatttcaagcccttggtggccatagagcaagtcacaagaaacc 212  Q
    |||||| ||| ||||||||||||||||||| |||||||| || ||||| ||||||||  | ||||| || || ||||||||||| |||||    
T  20926089 tggtttgtatatttatgaatgcaaaacatgtaacagaacttttccttcttttcaagctttgggtggtcacagggcaagtcacaaaaaacc 20926000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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