View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1381_low_30 (Length: 239)
Name: NF1381_low_30
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1381_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 6712973 - 6713060
Alignment:
| Q |
84 |
gatgaaaccacaaagagtaattggagaagagacctcattgaaattgctggcaaagatgggtttgtagtcacagattccaggttattta |
171 |
Q |
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| T |
6712973 |
gatgaatccacaaagagtaattggagaagagacctcattgatattggtggcaaagatgggtttatagtcacagattccaggttattta |
6713060 |
T |
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Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 6536842 - 6536755
Alignment:
| Q |
84 |
gatgaaaccacaaagagtaattggagaagagacctcattgaaattgctggcaaagatgggtttgtagtcacagattccaggttattta |
171 |
Q |
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| T |
6536842 |
gatgaatccacaaagagtaattggagaagagacctcattgatattggtggcatagcagggtttgtactcaaagattccaggttattta |
6536755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 84 - 166
Target Start/End: Original strand, 6750180 - 6750262
Alignment:
| Q |
84 |
gatgaaaccacaaagagtaattggagaagagacctcattgaaattgctggcaaagatgggtttgtagtcacagattccaggtt |
166 |
Q |
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| T |
6750180 |
gatgaatcaacaaagagtaattggagaagagacctcattgatattggtggcacagctgggtttgtcctcatagattccaggtt |
6750262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 170
Target Start/End: Original strand, 6648380 - 6648466
Alignment:
| Q |
84 |
gatgaaaccacaaagagtaattggagaagagacctcattgaaattgctggcaaagatgggtttgtagtcacagattccaggttattt |
170 |
Q |
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| T |
6648380 |
gatgaatccacaaagagtaattggaaaagagacctcattgatattggcggcatagcaggctttgtactcaaagattccaggtcattt |
6648466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 83 - 171
Target Start/End: Complemental strand, 6592005 - 6591917
Alignment:
| Q |
83 |
agatgaaaccacaaagagtaattggagaagagacctcattgaaattgctggcaaagatgggtttgtagtcacagattccaggttattta |
171 |
Q |
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| T |
6592005 |
agatgaatccacaaagagtaattggaaaagagaactctttgatattggtggaatagcagggtttgtcctcatagattccaggttattta |
6591917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 167
Target Start/End: Original strand, 6833627 - 6833710
Alignment:
| Q |
84 |
gatgaaaccacaaagagtaattggagaagagacctcattgaaattgctggcaaagatgggtttgtagtcacagattccaggtta |
167 |
Q |
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| T |
6833627 |
gatgaatccaaaaagagtaattggagaagagatctctttgatattggtggcatagctgggtttgtactcttaggttccaggtta |
6833710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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