View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1381_low_33 (Length: 225)
Name: NF1381_low_33
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1381_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 1330334 - 1330458
Alignment:
| Q |
1 |
ttctatccaacacccacctccaagaccttcacttcctccaccaattcatccaccctccttaccacattcttaaagattaagctatttccagcattccaaa |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1330334 |
ttctatccaacacccaactccaagaccttcacttcctccaccaattcatccaccctccttaccacattcttaaagattaagctatttctagcattccaaa |
1330433 |
T |
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| Q |
101 |
taacccaaagtgccgcgtgccaaat |
125 |
Q |
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| T |
1330434 |
taacccaaagtgccgcgtgccaaat |
1330458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 14247546 - 14247675
Alignment:
| Q |
1 |
ttctatccaacacccacctccaagac-----cttcacttcctccaccaattcatccaccctccttaccacattcttaaagattaagctatttccagcatt |
95 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14247546 |
ttctatccaacacccacctccaagacagtaccttcacttcctccaccaattcatccaccctccttaccacattcttaaagattaagctatttctagcatt |
14247645 |
T |
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| Q |
96 |
ccaaataacccaaagtgccgcgtgccaaat |
125 |
Q |
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||||||||| ||||||| ||||||||||| |
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| T |
14247646 |
ccaaataacttaaagtgctgcgtgccaaat |
14247675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 25 - 125
Target Start/End: Original strand, 9850600 - 9850700
Alignment:
| Q |
25 |
accttcacttcctccaccaattcatccaccctccttaccacattcttaaagattaagctatttccagcattccaaataacccaaagtgccgcgtgccaaa |
124 |
Q |
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||||||||||||||| ||||||| ||||||||| ||||||||||| |||||||||||||||| | || ||||||||||||||||||||||| |||||||| |
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| T |
9850600 |
accttcacttcctccgccaattcctccaccctctttaccacattcataaagattaagctattcctagaattccaaataacccaaagtgccgtgtgccaaa |
9850699 |
T |
|
| Q |
125 |
t |
125 |
Q |
| |
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| |
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|
| T |
9850700 |
t |
9850700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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