View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1381_low_6 (Length: 354)
Name: NF1381_low_6
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1381_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 30 - 344
Target Start/End: Complemental strand, 35419395 - 35419079
Alignment:
| Q |
30 |
caaatttacttgttgaaactttaaaatgcggttttgtcaaaattacagtgttttatttaccgtgatttcatccgaacacatcatgattccaatcatagat |
129 |
Q |
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| T |
35419395 |
caaatttacttgttgaaactttaaaatgcggttttgtcaaaattacaatgatttatttatcgtgatttcatccgaacacatcatgattccaatcatagat |
35419296 |
T |
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| Q |
130 |
tgtaatatatttcatagatttaaattgagatatttgagtccacccaaaattaacatcaaagagaatcgaatttgaaacatc--gaaggagcacactccca |
227 |
Q |
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| T |
35419295 |
tataacatattttatagatttaaattgagatatttgagtccacccaaaattaatatcaaggagaatcgaatatgaaacctcaagaaggagcacactttca |
35419196 |
T |
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| Q |
228 |
aatttaaaacc-aaaaccatgatgcgacccaagtgggttactagctagtaactattcctaattaccttgtatcataaagtataaagtataaagaagtgtt |
326 |
Q |
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| T |
35419195 |
aatctaaaaccaaaaaccatggtgcgacccaagtgggttactagctagtaactattcctaattaccttgta-ctactatcataaagtataaagaagtgtt |
35419097 |
T |
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| Q |
327 |
atttcacatcgacctttg |
344 |
Q |
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| T |
35419096 |
gtttcacatcgacctttg |
35419079 |
T |
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