View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1381_low_8 (Length: 338)
Name: NF1381_low_8
Description: NF1381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1381_low_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 29 - 338
Target Start/End: Original strand, 25691212 - 25691516
Alignment:
| Q |
29 |
aagaatgaggttgttaatggtgtagggtggtccagagggttctattctgcgcatgctccttatcctacgcatcatcatcaagtcttgccataccaacatg |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25691212 |
aagaatgaggttgttaatggtgtagggtggtccagagggttctattctgcgcatgttccttatcctacgcatcatcatcaagtcttgccataccaacatg |
25691311 |
T |
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| Q |
129 |
atcaatgtcttcatgcaggtcttaatatctcttcaatgctatctcatcttattttttgcattcacattataatcaaacaagtaaacaactacaagtacta |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| || |
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| T |
25691312 |
atcaatgtcttcatgcaggtcttaatatctcttcaatgctatctcatcttattttttgcattcacattataatcaagcaagtaaacagctacaagtaata |
25691411 |
T |
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| Q |
229 |
accatccctgaaagaagnnnnnnnnnnnnnnnnctaagtactattccataatagtataatgttcattaccctaactcaactacttgattgataccttcaa |
328 |
Q |
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||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
25691412 |
accatccctaaaaaaa-----aaaaaaaaaaaactaagtactattccatataagtataatgttcattaccctaactcaactacttgattgatatctttaa |
25691506 |
T |
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| Q |
329 |
tcttataatt |
338 |
Q |
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||||| |||| |
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| T |
25691507 |
tcttacaatt |
25691516 |
T |
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