View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390-INSERTION-2 (Length: 300)

Name: NF1390-INSERTION-2
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390-INSERTION-2
NF1390-INSERTION-2
[»] chr4 (1 HSPs)
chr4 (7-300)||(55989944-55990241)
[»] chr7 (2 HSPs)
chr7 (7-246)||(3604619-3604859)
chr7 (264-300)||(3604529-3604565)
[»] chr2 (1 HSPs)
chr2 (207-300)||(27909234-27909327)
[»] chr6 (1 HSPs)
chr6 (226-300)||(24269074-24269148)
[»] chr8 (1 HSPs)
chr8 (224-260)||(15560919-15560955)
[»] chr5 (2 HSPs)
chr5 (224-260)||(10876717-10876753)
chr5 (224-260)||(10881788-10881824)


Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 7 - 300
Target Start/End: Complemental strand, 55990241 - 55989944
Alignment:
Q  7 aaaaagaaggcaagtcgctcaataattaaaacccgatctcagggtcctccaactccgggttcttaatgaagatcttcttttcgaacattcatggaatgag 106  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  55990241 aaaaagaaggcaagtcgctcaataattaaaacccggtctcagggtcctccaactccgggttcttaatgaagatcttcttttcgaacaatcatggaatgag 55990142  T
Q  107 ttcctcatttattttggcatattctcttctatgttgggggacatatatattttttaggctgacttgcttggattcattattgctggggaatttgttgcac 206  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  55990141 ttcctcatttattttggcatattctcttctatattgggggacatatatattttttaggctgacttgcttggattcattattgctagggaatttgttgcac 55990042  T
Q  207 gt----aatcacttgggtcgttttggattgagggagattcttctagcacccttcttgcatgattgtttcactttgggtcttcaagttctttcttctca 300  Q
    ||    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  55990041 gtagtcaatcacttgggtcgttttggattgagggagattcttctagcgcccttcttgcataattgtttcactttgggtcttcaagttctttcttctca 55989944  T

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Target: chr7 (Bit Score: 129; Significance: 9e-67; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 7 - 246
Target Start/End: Complemental strand, 3604859 - 3604619
Alignment:
Q  7 aaaaagaaggcaagtcgctcaataattaaaacccgatctcagggtcctccaactccgggttcttaatgaagatcttcttttcgaacattcatggaatgag 106  Q
    ||||||||| ||||||| | | |||||||| |||| | ||| ||||||||||||| ||||||| ||||||||||||||||| || ||||| ||||||| |    
T  3604859 aaaaagaagtcaagtcgttaagtaattaaatcccggtttcaaggtcctccaactctgggttctcaatgaagatcttcttttggatcattcgtggaatggg 3604760  T
Q  107 ttcctcatttattttggcatattctcttctatgttgggggacatatatattttttaggctgacttgcttggattcattattgctggggaatttgttgcac 206  Q
    ||||||||||||  |||||||||||||||||  ||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||  ||| |    
T  3604759 ttcctcatttataatggcatattctcttctaatttgggggacatatatatttttgaggctgaattgcttggattcattattgctagggaatttcctgcgc 3604660  T
Q  207 gtaatcact-tgggtcgttttggattgagggagattcttct 246  Q
    |||||||||  |||||| |||||||||||||||||||||||    
T  3604659 gtaatcactaggggtcgctttggattgagggagattcttct 3604619  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 300
Target Start/End: Complemental strand, 3604565 - 3604529
Alignment:
Q  264 attgtttcactttgggtcttcaagttctttcttctca 300  Q
    ||||||||||||||||||||||||||||||| |||||    
T  3604565 attgtttcactttgggtcttcaagttctttcatctca 3604529  T

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Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 207 - 300
Target Start/End: Original strand, 27909234 - 27909327
Alignment:
Q  207 gtaatcacttgggtcgttttggattgagggagattcttctagcacccttcttgcatgattgtttcactttgggtcttcaagttctttcttctca 300  Q
    ||||||||| |||||| |||||||| ||||||||||||||||| |||||||||||| | ||| |||||||| ||||||||||||||||||||||    
T  27909234 gtaatcactggggtcgctttggattaagggagattcttctagcgcccttcttgcataaatgtatcactttgtgtcttcaagttctttcttctca 27909327  T

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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 24269148 - 24269074
Alignment:
Q  226 tggattgagggagattcttctagcacccttcttgcatgattgtttcactttgggtcttcaagttctttcttctca 300  Q
    |||||||||  || |||||| ||| |||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  24269148 tggattgagatagtttcttccagcgcccttcttgcataattgtttcactttggatcttcaagttctttcttctca 24269074  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 15560919 - 15560955
Alignment:
Q  224 tttggattgagggagattcttctagcacccttcttgc 260  Q
    |||||||||||||||||||||||||| | ||||||||    
T  15560919 tttggattgagggagattcttctagcgctcttcttgc 15560955  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 10876717 - 10876753
Alignment:
Q  224 tttggattgagggagattcttctagcacccttcttgc 260  Q
    |||||||||||||||||||||||||| | ||||||||    
T  10876717 tttggattgagggagattcttctagcgcgcttcttgc 10876753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 260
Target Start/End: Original strand, 10881788 - 10881824
Alignment:
Q  224 tttggattgagggagattcttctagcacccttcttgc 260  Q
    |||||||||||||||||||||||||| | ||||||||    
T  10881788 tttggattgagggagattcttctagcgcgcttcttgc 10881824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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