View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1390-INSERTION-3 (Length: 705)
Name: NF1390-INSERTION-3
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390-INSERTION-3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 353 - 704
Target Start/End: Original strand, 56400652 - 56401003
Alignment:
| Q |
353 |
tgcattttactgataatgctttgagattgattgcaaagaaagcgatggcgaagaacacgggtgcacgtggtttaaaagccttattggaaaatattcttac |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56400652 |
tgcattttactgataatgctttgagattgattgcaaagaaagcgacggtgaagaacacgggtgcacgtggtttaaaagccttattggaaaatattcttac |
56400751 |
T |
|
| Q |
453 |
tgaagcaatgtttgatgtacacgctacctgtggaaatataagatcatattctattgtttttctcatctatatttccctaccctccaaaactgttgcatat |
552 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56400752 |
tgaagcaatgtttgatgtacacgctacctgtggaaatataagatcatattctattgtttttctcatctatatttccctaccctccaaaactgttgcatat |
56400851 |
T |
|
| Q |
553 |
ggaagtggannnnnnnnaaagaaaaaggtggttatcaatatgaatgttgatttttgtttttatctacagattccagacaagactgatattgataacataa |
652 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56400852 |
ggaagtggattttttttaaagaaaaaggtggttatcaatatgaatgttgatttttgtttttatctacagattccagacaagactgatattgataacataa |
56400951 |
T |
|
| Q |
653 |
atggggtactggttgatgaagaggcagttggacaggtcaatggtactggctg |
704 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
56400952 |
atggggtattggttgatgaagaggcagttggacaagtcaatggtactggctg |
56401003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 14101 times since January 2019
Visitors: 8375