View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1390-INSERTION-4 (Length: 526)
Name: NF1390-INSERTION-4
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390-INSERTION-4 |
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Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 8 - 339
Target Start/End: Complemental strand, 31824379 - 31824041
Alignment:
| Q |
8 |
atacctaatgtttatagtgctcaagaatgacagaaaaaa-------ccatagtattatgcttggtttaaaaagaaaattctataccaaaactcaaacaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31824379 |
atacctaatgtttatagtgctcaagaatgacagaaaaaagaaaaaaccatagtattatgcttggtttaaaaataaaattctataccaaaactcaaacaca |
31824280 |
T |
|
| Q |
101 |
acctaaatgagataaaatgaaggtaannnnnnncggagtaannnnnnnactaaaaaagtggtctaagcccaaaagagaaaggagactgcatgaaaattaa |
200 |
Q |
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| T |
31824279 |
acctaaatgagataaaatgaaggtaattttttccggagtaatttttttactaaaaaagtggtctaagcccaaaagagaaaggaggctgcatgaaaattaa |
31824180 |
T |
|
| Q |
201 |
atgagggacactaaacccaacaacgttagctaacaaaaaatgattaatttgagtcagacataagtcttaacaaatcaaagtagaacccagactgcaacca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||| |||||||||||| |
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| T |
31824179 |
atgagggacactaaacccaacaacgttagctaacaaaaaatgattaatttgaatcagacatgagtattaacaaatcaaagtagaacctagactgcaacca |
31824080 |
T |
|
| Q |
301 |
aaatttgaaagagcctcaacgtacaaattggcttcacga |
339 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
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| T |
31824079 |
aaatttgcaagagcctcaacgtacaaattggcttcacga |
31824041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 342 - 526
Target Start/End: Complemental strand, 31823938 - 31823754
Alignment:
| Q |
342 |
atattaaccacaacccacgagtcaatatgaagttcaacattttgaaaccccaaactccacgcatatcataatccttctaacacacatccgagctcaaccg |
441 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31823938 |
atattaaccacaacccacgagtcaatatgaagttcaacatttcgaaaccccaaactccacgcatatcataatccttctaacacacatccgagctcaacca |
31823839 |
T |
|
| Q |
442 |
ccaatacgttacatagaccttagagtatagcagaactacccgaccactcaccattacaacctcatatgagcctccattcctcgtc |
526 |
Q |
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||||||| ||||| | |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31823838 |
ccaatacattacaaataccttagagtatagcaaaactacccaaccactcaccattacaacctcatatgagcctccattcctcgtc |
31823754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 11784365 - 11784294
Alignment:
| Q |
228 |
agctaacaaaaaatgattaatttgagtcagacataagtcttaacaaatcaaagtagaacccagactgcaacc |
299 |
Q |
| |
|
|||||| || |||||| ||||||||||| ||||| | || |||||| |||||| |||||||| ||||||||| |
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|
| T |
11784365 |
agctaataacaaatgactaatttgagtcggacatgactcataacaattcaaagaagaacccaaactgcaacc |
11784294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 217 - 320
Target Start/End: Complemental strand, 30459222 - 30459119
Alignment:
| Q |
217 |
ccaacaacgttagctaacaaaaaatgattaatttgagtcagacataagtcttaacaaatcaaagtagaacccagactgcaaccaaaatttgaaagagcct |
316 |
Q |
| |
|
|||||||| | ||| || || |||||| ||||||||||| | ||| | || |||||||||||||||||||||| ||||||||| | |||| |||||| | |
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|
| T |
30459222 |
ccaacaacatcagcgaataacaaatgactaatttgagtcgggcatgactcataacaaatcaaagtagaacccaaactgcaacctatttttgcaagagcat |
30459123 |
T |
|
| Q |
317 |
caac |
320 |
Q |
| |
|
|||| |
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|
| T |
30459122 |
caac |
30459119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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