View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390-INSERTION-49 (Length: 310)

Name: NF1390-INSERTION-49
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390-INSERTION-49
NF1390-INSERTION-49
[»] chr7 (11 HSPs)
chr7 (54-309)||(235741-236008)
chr7 (54-309)||(47876554-47876821)
chr7 (54-309)||(11277554-11277822)
chr7 (54-309)||(37919115-37919382)
chr7 (54-309)||(29967546-29967813)
chr7 (56-309)||(31177609-31177874)
chr7 (56-309)||(4938432-4938697)
chr7 (56-299)||(17720225-17720471)
chr7 (190-309)||(38890170-38890289)
chr7 (208-290)||(48394494-48394576)
chr7 (208-290)||(37254348-37254430)
[»] chr6 (11 HSPs)
chr6 (54-309)||(24767726-24767993)
chr6 (55-309)||(18651537-18651803)
chr6 (56-309)||(12733696-12733961)
chr6 (56-304)||(5734545-5734805)
chr6 (54-307)||(21167798-21168063)
chr6 (127-309)||(18789255-18789448)
chr6 (188-287)||(15959262-15959361)
chr6 (188-297)||(32536478-32536587)
chr6 (188-268)||(14373439-14373519)
chr6 (208-290)||(11462005-11462087)
chr6 (190-275)||(13937305-13937390)
[»] chr3 (20 HSPs)
chr3 (54-309)||(34333117-34333384)
chr3 (54-301)||(40930830-40931089)
chr3 (56-309)||(2363848-2364113)
chr3 (57-309)||(7312347-7312612)
chr3 (197-309)||(15827282-15827394)
chr3 (197-301)||(10312957-10313061)
chr3 (57-291)||(19920534-19920780)
chr3 (56-309)||(10323875-10324140)
chr3 (55-187)||(7032022-7032155)
chr3 (223-301)||(926700-926778)
chr3 (208-299)||(15312163-15312254)
chr3 (208-287)||(11310667-11310746)
chr3 (190-275)||(963613-963698)
chr3 (191-271)||(17098327-17098407)
chr3 (208-275)||(50651816-50651883)
chr3 (190-276)||(48570489-48570575)
chr3 (188-282)||(26771437-26771528)
chr3 (220-275)||(3140457-3140512)
chr3 (54-154)||(3140589-3140690)
chr3 (51-88)||(50651647-50651684)
[»] chr4 (24 HSPs)
chr4 (54-309)||(7403483-7403751)
chr4 (51-309)||(19754834-19755103)
chr4 (51-309)||(19784703-19784972)
chr4 (56-309)||(47686199-47686464)
chr4 (55-309)||(20788583-20788849)
chr4 (54-307)||(15739794-15740059)
chr4 (56-309)||(159995-160260)
chr4 (56-309)||(23642895-23643160)
chr4 (56-309)||(13271195-13271460)
chr4 (205-309)||(8890594-8890698)
chr4 (197-309)||(16427120-16427232)
chr4 (56-309)||(47418376-47418641)
chr4 (188-268)||(23163079-23163159)
chr4 (188-256)||(11587646-11587714)
chr4 (102-277)||(17402037-17402223)
chr4 (190-275)||(19740490-19740575)
chr4 (234-309)||(43019511-43019587)
chr4 (190-276)||(2822487-2822573)
chr4 (208-281)||(55726061-55726134)
chr4 (96-156)||(2822382-2822442)
chr4 (190-290)||(48311680-48311780)
chr4 (208-275)||(5790556-5790623)
chr4 (190-276)||(54483609-54483695)
chr4 (238-275)||(46145280-46145317)
[»] chr1 (14 HSPs)
chr1 (54-309)||(26059462-26059729)
chr1 (57-309)||(11909410-11909675)
chr1 (56-310)||(6050172-6050438)
chr1 (57-309)||(51052050-51052315)
chr1 (67-309)||(12813519-12813773)
chr1 (54-307)||(6259390-6259655)
chr1 (57-309)||(4841970-4842239)
chr1 (56-309)||(35540620-35540885)
chr1 (192-309)||(24547518-24547635)
chr1 (54-309)||(13351885-13352152)
chr1 (188-268)||(47623513-47623593)
chr1 (190-269)||(6478130-6478209)
chr1 (208-303)||(37297967-37298062)
chr1 (190-295)||(16918259-16918364)
[»] chr8 (19 HSPs)
chr8 (51-309)||(13395959-13396229)
chr8 (51-309)||(41665668-41665938)
chr8 (54-309)||(32567567-32567833)
chr8 (56-309)||(7923957-7924222)
chr8 (54-309)||(32266135-32266402)
chr8 (56-309)||(171674-171939)
chr8 (56-299)||(9922182-9922437)
chr8 (56-309)||(20496655-20496920)
chr8 (56-301)||(8299382-8299639)
chr8 (190-297)||(5181252-5181359)
chr8 (188-268)||(34137411-34137491)
chr8 (193-268)||(29733403-29733478)
chr8 (209-297)||(12257920-12258008)
chr8 (209-297)||(12265312-12265400)
chr8 (208-282)||(2529484-2529558)
chr8 (190-287)||(25089979-25090077)
chr8 (220-297)||(28415727-28415804)
chr8 (208-282)||(13199721-13199795)
chr8 (123-156)||(43270185-43270218)
[»] chr5 (23 HSPs)
chr5 (54-301)||(25824590-25824849)
chr5 (54-309)||(42927702-42927969)
chr5 (54-309)||(19255425-19255692)
chr5 (54-309)||(23237954-23238221)
chr5 (56-299)||(35984095-35984349)
chr5 (57-309)||(12820254-12820519)
chr5 (57-309)||(12824769-12825034)
chr5 (57-309)||(30732619-30732884)
chr5 (56-309)||(42513291-42513556)
chr5 (56-309)||(27117465-27117730)
chr5 (54-309)||(8227597-8227864)
chr5 (56-299)||(28535979-28536234)
chr5 (56-309)||(3418354-3418619)
chr5 (136-299)||(31641338-31641512)
chr5 (208-299)||(26072474-26072565)
chr5 (55-308)||(32228376-32228641)
chr5 (208-275)||(8941876-8941943)
chr5 (208-299)||(18090230-18090321)
chr5 (190-275)||(33169263-33169348)
chr5 (188-268)||(29142412-29142492)
chr5 (259-309)||(12032467-12032517)
chr5 (222-275)||(24407558-24407611)
chr5 (206-290)||(18359556-18359640)
[»] scaffold0034 (1 HSPs)
scaffold0034 (56-309)||(106147-106412)
[»] scaffold0369 (1 HSPs)
scaffold0369 (57-309)||(11510-11774)
[»] chr2 (11 HSPs)
chr2 (57-309)||(4551747-4552004)
chr2 (102-297)||(41206589-41206795)
chr2 (123-282)||(15917251-15917421)
chr2 (188-287)||(17765410-17765509)
chr2 (208-299)||(15391724-15391815)
chr2 (188-268)||(28252333-28252413)
chr2 (208-290)||(12645126-12645208)
chr2 (190-293)||(40176257-40176360)
chr2 (190-276)||(33516234-33516320)
chr2 (241-309)||(40914380-40914448)
chr2 (207-276)||(38604840-38604909)
[»] scaffold0511 (1 HSPs)
scaffold0511 (127-309)||(5788-5981)
[»] scaffold0161 (1 HSPs)
scaffold0161 (208-299)||(6477-6568)


Alignment Details
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 54 - 309
Target Start/End: Original strand, 235741 - 236008
Alignment:
Q  54 tttgcaatttattaattatgcaggttgtttgagagggaaacgt-ctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 152  Q
    ||||||||||||||||||||||||||||| |||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  235741 tttgcaatttattaattatgcaggttgttcgagagggcgacgttctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacgaaat 235840  T
Q  153 gacaagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtattta 241  Q
    || | ||||||||||||||||||||||| ||||||||           |||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  235841 gatatgatttttagaaatagacaaagctctttgccacaaatgctagataaagtgaaatcaacttctttgtggtggttaaaggcttgtaatgttgtattta 235940  T
Q  242 gttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||||| |||||||  | ||||||||||  | ||||||| ||||||||||||||||||||| |||||||    
T  235941 gttttggtactcaacagtggtggtcgagtctgctttcacgtctgggtattgactgatttggttgtaat 236008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 54 - 309
Target Start/End: Complemental strand, 47876821 - 47876554
Alignment:
Q  54 tttgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 152  Q
    ||||||||||||||||||||||||||||| |||||||  | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47876821 tttgcaatttattaattatgcaggttgttcgagagggcgatggtctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaaaggaat 47876722  T
Q  153 gacaagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtattta 241  Q
    || | ||||||||||||||||||||| | ||||||||           |||||||||||||||||||||||||||||||| ||| |||||| ||||||||    
T  47876721 gataggatttttagaaatagacaaagttctttgccacaaatgctagaaaaagtgaaatcaacttctttgtggtggttaaaggctagtaatgttgtattta 47876622  T
Q  242 gttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||||| |||||||| | |||||||||| ||  |||| ||||||||||||||||| ||||| |||||||    
T  47876621 gttttggtactcatcagtggtggtcgagcctacttttatgtctgggtattgactcatttggttgtaat 47876554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 54 - 309
Target Start/End: Original strand, 11277554 - 11277822
Alignment:
Q  54 tttgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 152  Q
    |||||||||||||||||| |||||||||| |||||||   || |||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||    
T  11277554 tttgcaatttattaattacgcaggttgttcgagagggcgtcggtctttcttccacttaatttggttgctttgtgttttggtgttgtggaatgaaaggaat 11277653  T
Q  153 gacaagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatc-aacttctttgtggtggttaaaagcttgtaatgctgtattt 240  Q
    || | |||||||||||||||||||||  |||||||||           ||||||||||| ||||||||||||||||||||| ||| | |||| |||||||    
T  11277654 gataggatttttagaaatagacaaagtattttgccacaaatactagataaagtgaaatcaaacttctttgtggtggttaaaggctagcaatgttgtattt 11277753  T
Q  241 agttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    |||||| |||||||| | |||||||||| ||| |||| ||||||||||||||||||||||| |||||||    
T  11277754 agttttggtactcatcagtggtggtcgagcccacttttatgtctgggtattgactgatttggttgtaat 11277822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 54 - 309
Target Start/End: Complemental strand, 37919382 - 37919115
Alignment:
Q  54 tttgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 152  Q
    |||||||||||||||||| ||||||||||||||| |   ||| |||||||||||||||||||| |||||| |||||||||||||||||||||||  | ||    
T  37919382 tttgcaatttattaattacgcaggttgtttgagaagatgacggtctttcttccacttgatttgattgcttcgtgtttcggtgttgtggaatgaaatggat 37919283  T
Q  153 gacaagatttttagaaatagacaaagctttttgccacaaa-----------gtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtattta 241  Q
    || | |||||||||||||||||||||   | |||||||||           ||||||||||||||||||||||||||||| ||| | |||| ||||||||    
T  37919282 gataggatttttagaaatagacaaagtactctgccacaaatgttagataaagtgaaatcaacttctttgtggtggttaaaggctagcaatgttgtattta 37919183  T
Q  242 gttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||||| |||||||| | ||||||||||||||||||| ||||| | ||||||||||||||| |||||||    
T  37919182 gttttggtactcatcagtggtggtcgaacccgcttttatgtccgtgtattgactgatttggttgtaat 37919115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 54 - 309
Target Start/End: Complemental strand, 29967813 - 29967546
Alignment:
Q  54 tttgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 152  Q
    |||||||||||| ||||| |||||||||| ||||||    || |||||||||||||| ||||||||||||||||| | |||| |||||||||||||||||    
T  29967813 tttgcaatttatcaattacgcaggttgttcgagaggacgtcggtctttcttccacttaatttggttgctttgtgtctgggtgctgtggaatgaacggaat 29967714  T
Q  153 gacaagatttttagaaatagacaaagctttttgccacaaa-----------gtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtattta 241  Q
    || | |||||||||||||||||||||     |||||||||           ||||||||||| ||||||||||||||||| ||| |||||| ||| ||||    
T  29967713 gataggatttttagaaatagacaaagtacgctgccacaaatgctagataatgtgaaatcaacctctttgtggtggttaaaggctagtaatgttgttttta 29967614  T
Q  242 gttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||||| |||||||| | |||||||||| |||||||| ||||||||||||||||||||||| |||||||    
T  29967613 gttttggtactcatcagtggtggtcgagcccgcttttatgtctgggtattgactgatttggttgtaat 29967546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 56 - 309
Target Start/End: Original strand, 31177609 - 31177874
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    ||||||||||  ||||||||||||||| ||| |||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  31177609 tgcaatttatacattatgcaggttgttcgagtgggcgacggtctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaaaggaatga 31177708  T
Q  155 caagatttttagaaatagacaaagctttttgcc-----------acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | | |||||||||||||||||||   | ||||           | |||||||| | |||||| ||||||||| |||| | | |||||| ||||||||||    
T  31177709 taggctttttagaaatagacaaagtactgtgcctcaattgctagataaagtgaagttaacttcgttgtggtggctaaaggttagtaatgttgtatttagt 31177808  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||| | |||||| | |||||||||| ||| |||| ||||||||||||||| ||||||| |||||||    
T  31177809 tttggcactcatcagtggtggtcgagcccacttttatgtctgggtattgattgatttgtttgtaat 31177874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 56 - 309
Target Start/End: Original strand, 4938432 - 4938697
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    ||||||||||  | ||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||  ||||| ||||||||||| |||||||    
T  4938432 tgcaatttatacaatatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtcacggtggtgtggaatgaaaggaatga 4938531  T
Q  155 caagatttttagaaatagacaaagctttttgcc-----------acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | | ||||||||||||| |||||     ||||           | |||||||| | |||||| ||||||||| |||| ||| |||||| ||||||||||    
T  4938532 taggctttttagaaatagtcaaagtacagtgcctcaattgctcgataaagtgaagttaacttcgttgtggtggctaaaggctagtaatgttgtatttagt 4938631  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||| | |||||| | |||||||||| ||| |||| ||||||||||||||| ||||||| |||||||    
T  4938632 tttggcactcatcagtggtggtcgagcccacttttatgtctgggtattgattgatttgtttgtaat 4938697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 56 - 299
Target Start/End: Complemental strand, 17720471 - 17720225
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacgt-ctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    |||||||||||||||||||||| |||| |||||||  | || | ||||| || ||||||||| |||||  |||||||||||||||||||||  ||         
T  17720471 tgcaatttattaattatgcaggatgttcgagagggcgatgttccttctttcatttgatttggctgcttgttgtttcggtgttgtggaatgataggc---- 17720376  T
Q  155 caagatttttagaaatagacaaagctttttgccacaaa-----------gtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
         ||||||||||||||||||| | |||||||||||           ||||||||||||||||||||||||||||| |||||||||| ||| ||||||    
T  17720375 -----tttttagaaatagacaaagttctttgccacaaatgctagataaagtgaaatcaacttctttgtggtggttaaaggcttgtaatgttgtttttagt 17720281  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatt 299  Q
    ||| |||||||  | |||||||||| ||||||||| ||| ||||||||||||||||    
T  17720280 tttggtactcaccagtggtggtcgagcccgctttcttgtttgggtattgactgatt 17720225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 190 - 309
Target Start/End: Original strand, 38890170 - 38890289
Alignment:
Q  190 aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggta 289  Q
    |||||||||||||||||||||||||||||||| | | |||||| |||||||| |||| | |||||| | ||||||| || |||||||| |||||||||||    
T  38890170 aaagtgaaatcaacttctttgtggtggttaaaggttagtaatgttgtatttaattttggcactcatcagtggtggttgagcccgcttttatgtctgggta 38890269  T
Q  290 ttgactgatttgattgtaat 309  Q
    ||||||||||||||||||||    
T  38890270 ttgactgatttgattgtaat 38890289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 48394576 - 48394494
Alignment:
Q  208 ttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtat 290  Q
    ||||||||||| |||||| |||||| ||| |||| |||  |||||||||||||||||||||||||||| | |||| |||||||    
T  48394576 ttgtggtggttgaaagctagtaatgttgtctttaatttcggtactcataattggtggtcgaacccgctattatgtatgggtat 48394494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 37254430 - 37254348
Alignment:
Q  208 ttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtat 290  Q
    ||||||||||| |||||| ||||||  || |||| |||| |||| |||||||||||||||| ||||| || |||| |||||||    
T  37254430 ttgtggtggttgaaagctagtaatgtagtctttaattttggtacacataattggtggtcgagcccgcatttatgtatgggtat 37254348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 150; Significance: 3e-79; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 54 - 309
Target Start/End: Original strand, 24767726 - 24767993
Alignment:
Q  54 tttgcaatttattaattatgcaggttgtttgagagggaaacgt-ctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 152  Q
    ||||||||||||||||||||||||||||| |||||||  || | |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  24767726 tttgcaatttattaattatgcaggttgttcgagagggcgacattcttttttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacgtaat 24767825  T
Q  153 gacaagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtattta 241  Q
    ||||  |||||||||||||||||||||| ||||||||           |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24767826 gacataatttttagaaatagacaaagctctttgccacaaatgctagataaagtgaaatcatcttctttgtggtggttaaaagcttgtaatgctgtattta 24767925  T
Q  242 gttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||||  ||| |||||||||||||||||  ||||| |||||| |||||||||||||||||| |||||||    
T  24767926 gtttgggtattcataattggtggtcgagtccgctctcatgtttgggtattgactgatttggttgtaat 24767993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 55 - 309
Target Start/End: Original strand, 18651537 - 18651803
Alignment:
Q  55 ttgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatg 153  Q
    |||||||||||||||||||||||||||| |||||||  ||| ||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  18651537 ttgcaatttattaattatgcaggttgttcgagagggcgacgatctttttttcacttgatttggttactttgtgtttcagtgttgtggaatgaacggaatg 18651636  T
Q  154 acaagatttttagaaatagacaaagctttttgccacaaa-----------gtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttag 242  Q
    |||| |||||||||||||||||||||| |||||||||||           || | |||| |||||||||||||||||||||||  ||||| ||| |||||    
T  18651637 acaaaatttttagaaatagacaaagctctttgccacaaatgctagataaggttatatcatcttctttgtggtggttaaaagctcataatgttgtgtttag 18651736  T
Q  243 ttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    |||| ||||||| |||||||||||||||||||| | |||| |||||||||||| ||||| |||||||    
T  18651737 ttttggtactcagaattggtggtcgaacccgctgttatgtttgggtattgactaatttggttgtaat 18651803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 56 - 309
Target Start/End: Complemental strand, 12733961 - 12733696
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    ||||||||||||||||||| ||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12733961 tgcaatttattaattatgccggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaaaggaatga 12733862  T
Q  155 caagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | | |||||||||||||||||||    |||||||           |||||||||||||||||||||||||||||||| ||| |||||| ||||||||||    
T  12733861 taggctttttagaaatagacaaagtacgttgccacaattgctagataaagtgaaatcaacttctttgtggtggttaaaggctagtaatgttgtatttagt 12733762  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||| | |||||  |  ||||||||| |||||||| |||| ||||||||||||||||||||||||||    
T  12733761 tttggcactcaacagcggtggtcgagcccgcttttatgtttgggtattgactgatttgattgtaat 12733696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 56 - 304
Target Start/End: Original strand, 5734545 - 5734805
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacgt-ctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    ||||||||||||||||||||||||||| ||||||| ||||| | ||||| || ||||||||||| |||  |||||||||| |||||||||||||||||||    
T  5734545 tgcaatttattaattatgcaggttgttcgagagggcaacgttccttctttcatttgatttggttacttgttgtttcggtggtgtggaatgaacggaatga 5734644  T
Q  155 caagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     ||||||||||||||||||||||| | ||||||||           |||||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  5734645 taagatttttagaaatagacaaagttctttgccacaaatgctagataaagtgaaatcaacttctttgtggtggttaaaggcttgtaatgttgtatttagt 5734744  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgatt 304  Q
    ||| |||||||| | ||||||||||  |||||||| ||| |||| ||||||||||| ||||    
T  5734745 tttggtactcatcagtggtggtcgagtccgctttcttgtttgggcattgactgattggatt 5734805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 54 - 307
Target Start/End: Complemental strand, 21168063 - 21167798
Alignment:
Q  54 tttgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 152  Q
    |||||||||||||||||| |||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||    
T  21168063 tttgcaatttattaattacgcaggttgttcgagagggagacggtctttcttccacttgatttggttgctttgtgtttcggtgttgtagaatgaaaagaat 21167964  T
Q  153 gacaagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtattta 241  Q
    || | ||||||||| |||||||||||   ||||||||           ||||||||| ||||||||||||||||| |||| ||| | |||| ||||||||    
T  21167963 gataggatttttaggaatagacaaagtactttgccacaaatgctagataaagtgaaaccaacttctttgtggtggctaaaggctagcaatgttgtattta 21167864  T
Q  242 gttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgta 307  Q
    ||||| |||||||  | |||||||||| |||||||| |||| |||||||||||||||||| |||||    
T  21167863 gttttggtactcaacagtggtggtcgagcccgcttttatgtttgggtattgactgatttggttgta 21167798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 127 - 309
Target Start/End: Original strand, 18789255 - 18789448
Alignment:
Q  127 tttcggtgttgtggaatgaacggaatgacaagatttttagaaatagacaaagctttttgccacaaa-----------gtgaaatcaacttctttgtggtg 215  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||| |||    |||||||||||           |||||||||||||||||||||||    
T  18789255 tttcggtgttgtggaatgaaaggaatgataagatttttagaaatagaaaaactaatttgccacaaatgctagataaagtgaaatcaacttctttgtggtg 18789354  T
Q  216 gttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    |||||| ||| | |||||||||||||||||| |||||||| | |||||||| | |||||||| |||||  |||||||||| ||||| |||||||    
T  18789355 gttaaaggctagcaatgctgtatttagttttggtactcatcactggtggtcaagcccgcttttatgtccaggtattgactaatttggttgtaat 18789448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 188 - 287
Target Start/End: Original strand, 15959262 - 15959361
Alignment:
Q  188 acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctggg 287  Q
    ||||||| |||||| ||||||||||||||||||||| | |||||| ||| ||||||||| ||||||||||||||||||||| ||| |||| |||| ||||    
T  15959262 acaaagtaaaatcatcttctttgtggtggttaaaagttagtaatgttgtttttagttttggtactcataattggtggtcgagcccacttttatgtatggg 15959361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 297
Target Start/End: Complemental strand, 32536587 - 32536478
Alignment:
Q  188 acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctggg 287  Q
    ||||||| |||||| ||||||| |||||||||||||||  ||||| ||| ||||||||| ||||| ||||||||||||||| | | |||| |||| || |    
T  32536587 acaaagtaaaatcatcttctttttggtggttaaaagctattaatgttgtttttagttttggtactaataattggtggtcgagctcacttttatgtatgag 32536488  T
Q  288 tattgactga 297  Q
     |||||||||    
T  32536487 cattgactga 32536478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 268
Target Start/End: Original strand, 14373439 - 14373519
Alignment:
Q  188 acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcga 268  Q
    ||||||| |||||| ||||||||||||||||||||||| |||||| ||| ||||| | | ||| |||||||||||||||||    
T  14373439 acaaagtaaaatcatcttctttgtggtggttaaaagctagtaatgttgtttttagctatggtattcataattggtggtcga 14373519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 11462087 - 11462005
Alignment:
Q  208 ttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtat 290  Q
    ||||||||||| |||||| ||||||  || |||| |||| |||| |||||||||||||||| |||||||| |||| |||||||    
T  11462087 ttgtggtggttgaaagctagtaatgtagtctttaattttggtacacataattggtggtcgagcccgcttttatgtatgggtat 11462005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 13937390 - 13937305
Alignment:
Q  190 aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgct 275  Q
    ||||| ||||||  ||| ||||||||| | |||||| ||||||  || ||||||||| ||| ||||||||||||||||||||||||    
T  13937390 aaagtaaaatcatgttccttgtggtggatgaaagctagtaatgtagtttttagttttggtattcataattggtggtcgaacccgct 13937305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 2e-74; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 54 - 309
Target Start/End: Original strand, 34333117 - 34333384
Alignment:
Q  54 tttgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 152  Q
    |||||||||||||||||| |||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34333117 tttgcaatttattaattacgcaggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaaaggaat 34333216  T
Q  153 gacaagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtattta 241  Q
    || | |||||||||||||||||||||  |||||||||           |||||||||||||||||||||||||||||||| |||   |||| ||||||||    
T  34333217 gataggatttttagaaatagacaaagtattttgccacaaatgctagataaagtgaaatcaacttctttgtggtggttaaaggctaacaatgttgtattta 34333316  T
Q  242 gttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||||| |||||||| | |||||||||| |||||||| ||||||||||||||||||||||| |||||||    
T  34333317 gttttggtactcatcagtggtggtcgagcccgcttttatgtctgggtattgactgatttggttgtaat 34333384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 54 - 301
Target Start/End: Original strand, 40930830 - 40931089
Alignment:
Q  54 tttgcaatttattaattatgcaggttgtttgagagggaaacgt-ctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 152  Q
    ||||||||||||||||||||||||||||| |||||||  |||| ||||||| || ||||||||| ||||||||||||| ||||||||||||||||| |||    
T  40930830 tttgcaatttattaattatgcaggttgttcgagagggtgacgttctttctttcatttgatttggctgctttgtgtttcagtgttgtggaatgaacgaaat 40930929  T
Q  153 gacaagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtattta 241  Q
    || | ||||||||||||||||||||| | ||||||||           |||||||||||||||||||||||||||||||| |||||||||| ||| ||||    
T  40930930 gataggatttttagaaatagacaaagttctttgccacaaatgctagataaagtgaaatcaacttctttgtggtggttaaaggcttgtaatgttgttttta 40931029  T
Q  242 gttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttg 301  Q
    ||||  |||||||  | |||||||||| ||||||| ||||| ||||||||||||||||||    
T  40931030 gtttcggtactcaacagtggtggtcgagcccgcttgcatgtttgggtattgactgatttg 40931089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 56 - 309
Target Start/End: Complemental strand, 2364113 - 2363848
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    ||||||||||| ||||||||||||||| |||||||  ||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  2364113 tgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttgatttgattgctttgtgtttcggtgttgtggaatgaaaggaatga 2364014  T
Q  155 caagatttttagaaatagacaaagctttttgcc-----------acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | | |||||||||||||||||||   | ||||           | |||||||||| |||||| |||||||||||||| ||| |||||| ||||||||||    
T  2364013 taggctttttagaaatagacaaagtactgtgcctcaattgctagataaagtgaaattaacttcgttgtggtggttaaaggctagtaatgttgtatttagt 2363914  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||| | |||||| | |||||||||| ||| |||| |||||| |||||||||||||||| |||||||    
T  2363913 tttggcactcatcagtggtggtcgagccctcttttatgtctaggtattgactgatttgtttgtaat 2363848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 57 - 309
Target Start/End: Complemental strand, 7312612 - 7312347
Alignment:
Q  57 gcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatgac 155  Q
    |||||||||| ||||||||||||||| |||||||  ||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||     
T  7312612 gcaatttatttattatgcaggttgttcgagagggcgacgatctttcttgcacttgatttggttgctttgtgtttcagtgttgtggaatgaaaggaatgat 7312513  T
Q  156 aagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagtt 244  Q
    | | |||||||||||||||||||   | ||||||           ||||||||||||||||| |||||||||||||| ||| |||||| |||||||||||    
T  7312512 aggctttttagaaatagacaaagtactgtgccacaattgctagataaagtgaaatcaacttcgttgtggtggttaaaggctagtaatgttgtatttagtt 7312413  T
Q  245 ttagtactcataattggtggtcgaacccgctttcatgtctgggta-ttgactgatttgattgtaat 309  Q
    || | |||| | | |||||||||| |||||||| ||||||||||| |||||||| ||| |||||||    
T  7312412 ttggcactcgtcagtggtggtcgagcccgcttttatgtctgggtatttgactgacttgtttgtaat 7312347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 197 - 309
Target Start/End: Complemental strand, 15827394 - 15827282
Alignment:
Q  197 aatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactg 296  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||| || ||||||||||||||||||||||||||||||||    
T  15827394 aatcaacttctttgtggtggttaaaagcttgcaatgctgtatttagttttggtactcatcattgatgatcgaacccgctttcatgtctgggtattgactg 15827295  T
Q  297 atttgattgtaat 309  Q
    ||||| |||||||    
T  15827294 atttggttgtaat 15827282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 197 - 301
Target Start/End: Complemental strand, 10313061 - 10312957
Alignment:
Q  197 aatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactg 296  Q
    |||||||||||||||||||||||||||| ||||| | ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10313061 aatcaacttctttgtggtggttaaaagcgtgtaacgttgtatttagttttggtactcatcattggtggtcgaacccgctttcatgtctgggtattgactg 10312962  T
Q  297 atttg 301  Q
    |||||    
T  10312961 atttg 10312957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 57 - 291
Target Start/End: Original strand, 19920534 - 19920780
Alignment:
Q  57 gcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatgac 155  Q
    ||||||||| |||||||||||||||| |||||||  ||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||     
T  19920534 gcaatttatcaattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtctcggtgttgtggaatgaaaggaatgat 19920633  T
Q  156 aagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagtt 244  Q
    | | ||||| ||||||| |||||     ||||||           ||||||||||||||| | |||||||||||||||||| | |||| |||||||||||    
T  19920634 aggctttttcgaaatagccaaagtacagtgccacaattgttagataaagtgaaatcaactgcgttgtggtggttaaaagctagaaatgttgtatttagtt 19920733  T
Q  245 ttagtactcataattggtggtcgaacccgctttcatgtctgggtatt 291  Q
    || | || ||| | |||||||||| |||||| | |||||||||||||    
T  19920734 ttggcacccatcagtggtggtcgagcccgctcttatgtctgggtatt 19920780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 56 - 309
Target Start/End: Original strand, 10323875 - 10324140
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    ||||||||||  | ||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||  ||||| ||||||||||| |||||||    
T  10323875 tgcaatttatacaatatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtcacggtggtgtggaatgaaaggaatga 10323974  T
Q  155 caagatttttagaaatagacaaagctttttgcc-----------acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | | |||||||||||||||||||     ||||           | |||||||| | |||||| ||||||||| | || ||| |||||| ||||||||||    
T  10323975 taggctttttagaaatagacaaagtacagtgcctcaattgctcgataaagtgaagttaacttcgttgtggtggctcaaggctagtaatgttgtatttagt 10324074  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||| | |||||| | |||||||||| ||| |||| ||||||||||||||| ||||||| |||||||    
T  10324075 tttggcactcatcagtggtggtcgagcccacttttatgtctgggtattgagtgatttgtttgtaat 10324140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 55 - 187
Target Start/End: Complemental strand, 7032155 - 7032022
Alignment:
Q  55 ttgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatg 153  Q
    ||||||||||||||||||||||| || | |||||||   || ||||| || |||||||||||||| ||||||||||| |||||||||||||| |||||||    
T  7032155 ttgcaatttattaattatgcagggtgctcgagagggcggcgatctttttttcacttgatttggttactttgtgtttctgtgttgtggaatgagcggaatg 7032056  T
Q  154 acaagatttttagaaatagacaaagctttttgcc 187  Q
     |||||||||||| ||| ||||||||| ||||||    
T  7032055 ccaagatttttagtaatcgacaaagctctttgcc 7032022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 223 - 301
Target Start/End: Complemental strand, 926778 - 926700
Alignment:
Q  223 gcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttg 301  Q
    |||||||||| ||||||||||| | |||||||| |||||||||||| ||||||||||||||||||||||||||||||||    
T  926778 gcttgtaatgttgtatttagttatggtactcatcattggtggtcgagcccgctttcatgtctgggtattgactgatttg 926700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 15312254 - 15312163
Alignment:
Q  208 ttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatt 299  Q
    ||||||||||| |||||| |||||| ||||||||||||  ||||||||  ||||||||||||||| || | |||| ||||||| ||||||||    
T  15312254 ttgtggtggttgaaagctagtaatgttgtatttagtttcggtactcatctttggtggtcgaacccactcttatgtatgggtatcgactgatt 15312163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 287
Target Start/End: Original strand, 11310667 - 11310746
Alignment:
Q  208 ttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctggg 287  Q
    ||||||||||| |||||| | ||||  || |||| |||| |||| |||||||||||||||||||||||||||||| ||||    
T  11310667 ttgtggtggttgaaagctagcaatgtggtctttaattttggtacacataattggtggtcgaacccgctttcatgtatggg 11310746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 963613 - 963698
Alignment:
Q  190 aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgct 275  Q
    ||||| ||||||  ||| ||||||||| | |||||| ||||||  || ||||||||| ||| ||||||||||||||||||||||||    
T  963613 aaagtaaaatcatgttccttgtggtggatgaaagctagtaatgtagtttttagttttggtattcataattggtggtcgaacccgct 963698  T

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Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 271
Target Start/End: Original strand, 17098327 - 17098407
Alignment:
Q  191 aagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacc 271  Q
    |||| ||||||  ||| ||||||||||| ||| || |||| | ||| ||||||||||||||||||||||||||||| ||||    
T  17098327 aagtaaaatcatattccttgtggtggttgaaatctagtaaagatgtctttagttttagtactcataattggtggtcaaacc 17098407  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 50651816 - 50651883
Alignment:
Q  208 ttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgct 275  Q
    ||||||||||| |||||| ||||||  || ||||||||| ||| ||| ||||||||||||||||||||    
T  50651816 ttgtggtggttgaaagctagtaatgtagtttttagttttggtattcacaattggtggtcgaacccgct 50651883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 276
Target Start/End: Original strand, 48570489 - 48570575
Alignment:
Q  190 aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctt 276  Q
    ||||| ||||||| |||  |||||||||| ||||||  |||||  || |||| |||| ||||||||||||||||||||| |||||||    
T  48570489 aaagtaaaatcaaattccctgtggtggttgaaagctaataatgtggtctttatttttggtactcataattggtggtcgagcccgctt 48570575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 282
Target Start/End: Original strand, 26771437 - 26771528
Alignment:
Q  188 acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgt 282  Q
    ||||||| |||||| ||||||||||||   ||| | || |||||| ||| |||||||||  |||||||||||||||||||| ||| |||| ||||    
T  26771437 acaaagtaaaatcatcttctttgtggt---taacaactagtaatgttgtttttagttttgatactcataattggtggtcgagcccacttttatgt 26771528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 275
Target Start/End: Complemental strand, 3140512 - 3140457
Alignment:
Q  220 aaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgct 275  Q
    |||||| ||||||  || ||||||||| ||| ||||||||||||||||||||||||    
T  3140512 aaagctagtaatgtagtttttagttttggtattcataattggtggtcgaacccgct 3140457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 154
Target Start/End: Complemental strand, 3140690 - 3140589
Alignment:
Q  54 tttgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 152  Q
    |||||||||||||||||||||||||  ||||||||   |||| ||||| |||||  | |||||| | || ||||||| | | ||||||||||| ||||||    
T  3140690 tttgcaatttattaattatgcaggtgatttgagagcacaacgttcttttttccaactaatttggcttctgtgtgtttggatattgtggaatgagcggaat 3140591  T
Q  153 ga 154  Q
    ||    
T  3140590 ga 3140589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 50651647 - 50651684
Alignment:
Q  51 ttgtttgcaatttattaattatgcaggttgtttgagag 88  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  50651647 ttgtttgcagtttattaattatgcaggtggtttgagag 50651684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 6e-71; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 54 - 309
Target Start/End: Complemental strand, 7403751 - 7403483
Alignment:
Q  54 tttgcaatttattaattatgcaggttgtttgagagggaaacgt-ctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 152  Q
    ||||||||||||||||||||||||||||| |||||||  |||| |||| ||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  7403751 tttgcaatttattaattatgcaggttgttcgagagggcgacgttcttttttccacttgatttggttgctttgtgtttcggtgttgtcgattgaacggaat 7403652  T
Q  153 gacaagatttttagaaatagacaaagctttttgccac------------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtattt 240  Q
    |||||||||||||||||||||||||||| ||||||||            ||||||||||||  ||||||||||||||||||| || | |||| |||||||    
T  7403651 gacaagatttttagaaatagacaaagctctttgccacaaatgcctagataaagtgaaatcatattctttgtggtggttaaaaactcgcaatgttgtattt 7403552  T
Q  241 agttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    || |||  || ||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||||||    
T  7403551 agctttgatattcataattggtggtcgagcccgcattcatgtttgggtattgactgatttggttgtaat 7403483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 51 - 309
Target Start/End: Complemental strand, 19755103 - 19754834
Alignment:
Q  51 ttgtttgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacgg 149  Q
    ||||||||||||||||||||| ||||||||||||||| ||  ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  19755103 ttgtttgcaatttattaattacgcaggttgtttgagaaggcgacggtctttcttccacttgatttggttgctttgtgtttcggtgttgtggaa-gaaagg 19755005  T
Q  150 aatgacaagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtat 238  Q
    ||||| | ||||||||||||||||||| |   | ||||||           |||||||||||||||||||||||||||||||| ||| | ||||||||||    
T  19755004 aatgataggatttttagaaatagacaaggtactctgccacaaatgttagataaagtgaaatcaacttctttgtggtggttaaaggctagcaatgctgtat 19754905  T
Q  239 ttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    |||||||| |||||||| | |||||||||| |||||||| |||||| |||||||||||||||  |||||||    
T  19754904 ttagtttttgtactcatcagtggtggtcgagcccgcttttatgtctcggtattgactgatttcgttgtaat 19754834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 51 - 309
Target Start/End: Original strand, 19784703 - 19784972
Alignment:
Q  51 ttgtttgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacgg 149  Q
    ||||||||||||||||||||| ||||||||||||||| ||  ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  19784703 ttgtttgcaatttattaattacgcaggttgtttgagaaggcgacggtctttcttccacttgatttggttgctttgtgtttcggtgttgtggaa-gaaagg 19784801  T
Q  150 aatgacaagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtat 238  Q
    ||||| | ||||||||||||||||||| |   | ||||||           |||||||||||||||||||||||||||||||| ||| | ||||||||||    
T  19784802 aatgataggatttttagaaatagacaaggtactctgccacaaatgttagataaagtgaaatcaacttctttgtggtggttaaaggctagcaatgctgtat 19784901  T
Q  239 ttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    |||||||| |||||||| | |||||||||| |||||||| |||||| |||||||||||||||  |||||||    
T  19784902 ttagtttttgtactcatcagtggtggtcgagcccgcttttatgtctcggtattgactgatttcgttgtaat 19784972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 56 - 309
Target Start/End: Original strand, 47686199 - 47686464
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    |||||||||||||||||||||||||||  ||||||  ||| |||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  47686199 tgcaatttattaattatgcaggttgttcaagagggtgacggtctttctttcacttgatttggttgctttgtgtttcagtgttgtggaatgaaaggaatga 47686298  T
Q  155 caagatttttagaaatagacaaagctttttgccacaa-----------agtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | | ||||||||||||||| |||   ||||||||||           |||||||||||||||||||||||||||||| ||| | |||| ||||||||||    
T  47686299 taggctttttagaaatagactaagtactttgccacaaatgctagacaaagtgaaatcaacttctttgtggtggttaaaggctagcaatgttgtatttagt 47686398  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||| | |||||| | |||||||||| |||||||| ||||||||||||||||||||||| |||||||    
T  47686399 tttggcactcatcagtggtggtcgagcccgcttttatgtctgggtattgactgatttgtttgtaat 47686464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 55 - 309
Target Start/End: Original strand, 20788583 - 20788849
Alignment:
Q  55 ttgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatg 153  Q
    ||||||||||||||||||| |||||||| ||||||| |||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  20788583 ttgcaatttattaattatgtaggttgttcgagagggcaacgatcttt-tttcacttgatttggttactttgtgtttcggtgttgtggaatgaacggaatg 20788681  T
Q  154 acaagatttttagaaatagacaaagctttttgccacaaa-----------gtgaaatcaacttctttgtggtggttaaaagcttgt-aatgctgtattta 241  Q
    ||| ||||||||||||||||||||||| |||||||||||           || | |||| |||||||||||||||||||||||  | |||| ||| ||||    
T  20788682 acatgatttttagaaatagacaaagctctttgccacaaatgctagataaggttatatcatcttctttgtggtggttaaaagctcataaatgttgtgttta 20788781  T
Q  242 gttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    | ||| ||||||| |||||||||||||||||||| | |||| |||||||||||| ||||| |||||||    
T  20788782 gctttggtactcagaattggtggtcgaacccgctgttatgtttgggtattgactaatttggttgtaat 20788849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 54 - 307
Target Start/End: Complemental strand, 15740059 - 15739794
Alignment:
Q  54 tttgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 152  Q
    |||||||||||||||||| |||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  15740059 tttgcaatttattaattacgcaggttgttcgagagggagacggtctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaaatgaat 15739960  T
Q  153 gacaagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtattta 241  Q
     |   | |||||||||||||||||||   ||||||||           ||||||||||||||||||||||||||| |||| ||| | |||| ||||||||    
T  15739959 aatcggctttttagaaatagacaaagtactttgccacaaatgctagataaagtgaaatcaacttctttgtggtggctaaaggctagcaatgttgtattta 15739860  T
Q  242 gttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgta 307  Q
    ||||| |||||||  | |||||||||| |||||||| |||| |||||||||||||||||| |||||    
T  15739859 gttttggtactcaacagtggtggtcgagcccgcttttatgtttgggtattgactgatttggttgta 15739794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 56 - 309
Target Start/End: Original strand, 159995 - 160260
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    ||||||||||| ||||||||||||||| |||||||  ||| |||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||    
T  159995 tgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttgttttgtgtttcggtgttgtggaatgaaatgaatga 160094  T
Q  155 caagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | | |||||||||||||||||||   | ||||||           |||||||||| |||||| |||||||||||||| ||| |||||| ||||||||||    
T  160095 taggctttttagaaatagacaaagtactgtgccacaattactagataaagtgaaattaacttcgttgtggtggttaaaggctagtaatgttgtatttagt 160194  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||| | |  ||| | |||||||||| ||| |||| ||||||||||||||||||||||| |||||||    
T  160195 tttggcaaacatcagtggtggtcgagccctcttttatgtctgggtattgactgatttgtttgtaat 160260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 56 - 309
Target Start/End: Original strand, 23642895 - 23643160
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    ||||||||||| ||||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23642895 tgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaaaggaatga 23642994  T
Q  155 caagatttttagaaatagacaaagctttttgcc-----------acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | | |||||||||||||| ||||     ||||           | |||||||||| |||||| |||||||||||||| ||| |||||| ||||||||||    
T  23642995 taggctttttagaaatagataaagtaccgtgcctcaattgctagataaagtgaaattaacttcgttgtggtggttaaaggctagtaatgttgtatttagt 23643094  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||| | |||||| | |||||||||| ||| |||| |||||| |||||||||||||||| |||||||    
T  23643095 tttggcactcatcagtggtggtcgagccctcttttatgtctaggtattgactgatttgtttgtaat 23643160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 56 - 309
Target Start/End: Original strand, 13271195 - 13271460
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    ||||||||||| ||||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13271195 tgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaaaggaatga 13271294  T
Q  155 caagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | | |||||||||||||| ||||     || |||           |||||||||| |||||| |||||||||||||| ||| |||||| |||||||| |    
T  13271295 taggctttttagaaatagaaaaagtaaagtgacacaattgctagataaagtgaaattaacttcgttgtggtggttaaaggctagtaatgttgtatttatt 13271394  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||| | |||||| | |||||||||| ||  |||| ||||||||||||||||||||||| |||||||    
T  13271395 tttggcactcatcagtggtggtcgagccatcttttatgtctgggtattgactgatttgtttgtaat 13271460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 205 - 309
Target Start/End: Complemental strand, 8890698 - 8890594
Alignment:
Q  205 tctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgatt 304  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||    
T  8890698 tctttgtggtggttaaaagcttgtaatgctgtatttagttttggtactcataattggtggtcgagcctgctttcatgtctgggtattgactgatttggtt 8890599  T
Q  305 gtaat 309  Q
    |||||    
T  8890598 gtaat 8890594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 197 - 309
Target Start/End: Complemental strand, 16427232 - 16427120
Alignment:
Q  197 aatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactg 296  Q
    ||||||||||||||||||| |||||||| ||||| | ||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||| ||||    
T  16427232 aatcaacttctttgtggtgattaaaagcatgtaaagatgtatttagttttggtactcatcattggtggtcgaacccgctttcatgtctaggtattaactg 16427133  T
Q  297 atttgattgtaat 309  Q
    ||||| |||||||    
T  16427132 atttggttgtaat 16427120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 56 - 309
Target Start/End: Complemental strand, 47418641 - 47418376
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    ||||||||||  | ||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||  ||||| ||||||||||| |||||||    
T  47418641 tgcaatttatacaatatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtcacggtggtgtggaatgaaaggaatga 47418542  T
Q  155 caagatttttagaaatagacaaagctttttgcc-----------acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | | ||||||||||||| |||||     ||||           | |||||||| | |||||| ||||||||| |||| ||| |||||| ||||||||||    
T  47418541 taggctttttagaaatagtcaaagtacagtgcctcaattgctcgataaagtgaagttaacttcgttgtggtggctaaaggctagtaatgttgtatttagt 47418442  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||| | |||||| | |||||||||| ||| |||| ||||||||||||||| ||||||| |||||||    
T  47418441 tttggcactcatcagtggtggtcgagcccacttttatgtctgggtattgattgatttgtttgtaat 47418376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 268
Target Start/End: Original strand, 23163079 - 23163159
Alignment:
Q  188 acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcga 268  Q
    ||||||| |||||| ||||||||||||||||||||||| |||||| ||| ||||| | | |||||||||||||||||||||    
T  23163079 acaaagtaaaatcatcttctttgtggtggttaaaagctagtaatgttgtttttagctatggtactcataattggtggtcga 23163159  T

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Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 11587646 - 11587714
Alignment:
Q  188 acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcata 256  Q
    ||||||| |||||| ||||||||||||||||||||||| |||||| ||| ||||| ||| |||||||||    
T  11587646 acaaagtaaaatcatcttctttgtggtggttaaaagctagtaatgttgtttttagctttggtactcata 11587714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 277
Target Start/End: Original strand, 17402037 - 17402223
Alignment:
Q  102 ttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatgacaagatttttagaaatagacaaagctttttgccaca----------- 190  Q
    ||||||||||||||| | |  |||||||  || |||||||||||||||||||| | | | |||||||| ||| |||||| ||| |||||               
T  17402037 ttccacttgatttggcttcggtgtgtttgagttttgtggaatgaacggaatgataggctatttagaaacagaaaaagctctttaccacatatgttagata 17402136  T
Q  191 aagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgcttt 277  Q
    |||| |||||| |||||||||||| |||||| ||| |||||| |||| ||   ||| ||||||||||||||||||||| ||||||||    
T  17402137 aagtaaaatcatcttctttgtggtagttaaaggctagtaatgttgtagttcactttggtactcataattggtggtcgagcccgcttt 17402223  T

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Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 190 - 275
Target Start/End: Original strand, 19740490 - 19740575
Alignment:
Q  190 aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgct 275  Q
    ||||| ||||||  ||| ||||||||| | |||||| |||||| ||| |||| |||| |||||||||||||||||| |||||||||    
T  19740490 aaagtaaaatcatattccttgtggtggctgaaagctagtaatgttgtttttacttttggtactcataattggtggttgaacccgct 19740575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 309
Target Start/End: Complemental strand, 43019587 - 43019511
Alignment:
Q  234 tgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggta-ttgactgatttgattgtaat 309  Q
    ||||||||||||| | |||||| | ||||||||||  ||||||| ||||||||||| |||||||||||| |||||||    
T  43019587 tgtatttagttttggcactcatcagtggtggtcgagtccgcttttatgtctgggtatttgactgatttgtttgtaat 43019511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 276
Target Start/End: Original strand, 2822487 - 2822573
Alignment:
Q  190 aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctt 276  Q
    ||||||||||||| |||| |||||||||| |||||| ||||||   | |||| |||| ||||||||| ||| ||||||| |||||||    
T  2822487 aaagtgaaatcaaattctctgtggtggttgaaagctagtaatgtgttctttacttttggtactcatagttgatggtcgagcccgctt 2822573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 281
Target Start/End: Original strand, 55726061 - 55726134
Alignment:
Q  208 ttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatg 281  Q
    ||||||||||| |||||| ||||||  || |||| |||| |||  |||||||||||||||| ||||||||||||    
T  55726061 ttgtggtggttgaaagctagtaatgtggtctttaattttggtatacataattggtggtcgagcccgctttcatg 55726134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 2822382 - 2822442
Alignment:
Q  96 tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatgaca 156  Q
    ||||||||||||||||||||| | |  ||||||| ||| || |||||||||||||||||||    
T  2822382 tctttcttccacttgatttggcttcagtgtgtttgggttttatggaatgaacggaatgaca 2822442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 290
Target Start/End: Complemental strand, 48311780 - 48311680
Alignment:
Q  190 aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggta 289  Q
    ||||| ||||||| | || |||| ||| | |||||| ||||||  || |||| |||| ||||||||||||||||||||| |||||||  |||| ||||||    
T  48311780 aaagtaaaatcaaatactctgtgatggctgaaagctagtaatgtggtctttacttttggtactcataattggtggtcgagcccgcttgtatgtatgggta 48311681  T
Q  290 t 290  Q
    |    
T  48311680 t 48311680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 5790556 - 5790623
Alignment:
Q  208 ttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgct 275  Q
    ||||||||||| |||||| |||||| ||| ||||| ||  ||| ||||| ||||||||||||||||||    
T  5790556 ttgtggtggttgaaagctagtaatgttgtgtttagcttcggtattcatagttggtggtcgaacccgct 5790623  T

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Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 276
Target Start/End: Original strand, 54483609 - 54483695
Alignment:
Q  190 aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctt 276  Q
    ||||| ||||||| | | ||||||||| | |||||| ||||||  || ||||  ||| ||||||||||||||||||||| |||||||    
T  54483609 aaagtaaaatcaaataccttgtggtggctgaaagctagtaatgtggtctttacatttggtactcataattggtggtcgaccccgctt 54483695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 275
Target Start/End: Complemental strand, 46145317 - 46145280
Alignment:
Q  238 tttagttttagtactcataattggtggtcgaacccgct 275  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  46145317 tttagttttggtattcataattggtggtcgaacccgct 46145280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 9e-70; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 54 - 309
Target Start/End: Complemental strand, 26059729 - 26059462
Alignment:
Q  54 tttgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 152  Q
    ||||||||||||||||||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26059729 tttgcaatttattaattatgcaggttgttcgagagggtgacggtctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaaaggaat 26059630  T
Q  153 gacaagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtattta 241  Q
    || | ||||||||||||||||||| |   ||||||||           |||||||||||||||||||||||||||||||| ||| | |||| ||||||||    
T  26059629 gataggatttttagaaatagacaatgtactttgccacaaatgctagataaagtgaaatcaacttctttgtggtggttaaaggctagcaatgttgtattta 26059530  T
Q  242 gttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||||| |||||||| | |||||||||| |||||||| |||||||| |||||||||||||  |||||||    
T  26059529 gttttggtactcatcagtggtggtcgagcccgcttttatgtctggctattgactgatttagttgtaat 26059462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 57 - 309
Target Start/End: Original strand, 11909410 - 11909675
Alignment:
Q  57 gcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatgac 155  Q
    |||||||||| |||||||||||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  11909410 gcaatttatttattatgcaggttgtttgagagggtgacggtctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaaaggaatgat 11909509  T
Q  156 aagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagtt 244  Q
    | | |||||||||||||||||||   | ||||||           ||||||||||||||||| |||||||||||||| ||| |||||| |||||||||||    
T  11909510 aggctttttagaaatagacaaagtactgtgccacaattgctagataaagtgaaatcaacttcgttgtggtggttaaaggctagtaatgttgtatttagtt 11909609  T
Q  245 ttagtactcataattggtggtcgaacccgctttcatgtctgggta-ttgactgatttgattgtaat 309  Q
    || | |||||| | |||||||||| |||||||| ||||||||||| |||||||||||| |||||||    
T  11909610 ttggcactcatcagtggtggtcgagcccgcttttatgtctgggtatttgactgatttgtttgtaat 11909675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 56 - 310
Target Start/End: Complemental strand, 6050438 - 6050172
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    ||||||||||| ||||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  6050438 tgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaaaggaatga 6050339  T
Q  155 caagatttttagaaatagacaaagctttttgcc-----------acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | | |||||||||||||||||||  || ||||           | |||||||||| |||||| |||||||||||||| ||| |||||| ||||||||||    
T  6050338 taggctttttagaaatagacaaagtattgtgcctaaatttctagataaagtgaaattaacttcgttgtggtggttaaaggctagtaatgttgtatttagt 6050239  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaata 310  Q
    ||| | |||||| | |||||||||| ||| |||| ||||||||||||||||||||||| ||||||||    
T  6050238 tttggcactcatcagtggtggtcgagccctcttttatgtctgggtattgactgatttgtttgtaata 6050172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 57 - 309
Target Start/End: Complemental strand, 51052315 - 51052050
Alignment:
Q  57 gcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatgac 155  Q
    |||||||||||||||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  51052315 gcaatttattaattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaaaggaatgat 51052216  T
Q  156 aagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagtt 244  Q
    | | |||||||||||||||||||  || ||||||           ||||||||||||||||| ||||||||||||||  || |||||| |||||||||||    
T  51052215 aggctttttagaaatagacaaagtattgtgccacaattgctagataaagtgaaatcaacttcgttgtggtggttaaagactagtaatgttgtatttagtt 51052116  T
Q  245 ttagtactcataattggtggtcgaacccgctttcatgtctgggta-ttgactgatttgattgtaat 309  Q
    || | |||||| | |||||||||| |||||||| ||||||||||| || ||||||||| |||||||    
T  51052115 ttggcactcatcagtggtggtcgagcccgcttttatgtctgggtatttaactgatttgtttgtaat 51052050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 67 - 309
Target Start/End: Original strand, 12813519 - 12813773
Alignment:
Q  67 aattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatgacaagattttta 165  Q
    ||||| ||||||||||||||| ||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | || |||||    
T  12813519 aattacgcaggttgtttgagaaggcgacggtctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaaaggaatgataggaatttta 12813618  T
Q  166 gaaatagacaaagctttttgccacaaa-----------gtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactca 254  Q
    |||||||||||||   | |||||||||           ||||||||||||||||||||||||||||| ||| | |||| ||||||||||||||||| |||    
T  12813619 gaaatagacaaagtactctgccacaaatgttagataaagtgaaatcaacttctttgtggtggttaaaggctagcaatgttgtatttagttttagtattca 12813718  T
Q  255 taattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    | | |||||||||| |||||||| |||| |||||||||||||||||| |||||||    
T  12813719 tcagtggtggtcgagcccgcttttatgtttgggtattgactgatttggttgtaat 12813773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 54 - 307
Target Start/End: Complemental strand, 6259655 - 6259390
Alignment:
Q  54 tttgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 152  Q
    |||||||||||||||||| | |||||||| |||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  6259655 tttgcaatttattaattacgtaggttgttcgagagggagacggtcttttttccatttgatttggttgctttgtgtttcggtgttgtggaatgaaaggaat 6259556  T
Q  153 gacaagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtattta 241  Q
    || | |||||||||||||||||||||   ||||||||           ||||||||||||||||||||||||||| |||| ||| | |||| ||||||||    
T  6259555 gataggatttttagaaatagacaaagtactttgccacaaatgctagataaagtgaaatcaacttctttgtggtggctaaaggctagcaatgttgtattta 6259456  T
Q  242 gttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgta 307  Q
    ||||| |||||||  | |||||||||| |||||||| |||| ||||||||||||||| || |||||    
T  6259455 gttttggtactcaacactggtggtcgagcccgcttttatgtttgggtattgactgatatggttgta 6259390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 57 - 309
Target Start/End: Complemental strand, 4842239 - 4841970
Alignment:
Q  57 gcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatgac 155  Q
    |||||||||| |||| ||||||||||||||| ||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  4842239 gcaatttattcattacgcaggttgtttgagaaggcgacggtctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaaaggaatgat 4842140  T
Q  156 aagatttttagaaatagacaaag-----ctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatt 239  Q
    | |||||||||||||||||||||     ||  |||| ||           |||||||||||||||||||||||||||||||| ||| | ||| |||||||    
T  4842139 aggatttttagaaatagacaaagtactcctccttgcgacaaatgttagataaagtgaaatcaacttctttgtggtggttaaaggctagcaatcctgtatt 4842040  T
Q  240 tagttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||||||| ||| |||| | |||||||||| |||||||| |||| ||| |||||||||||||| |||||||    
T  4842039 tagttttggtattcatcagtggtggtcgagcccgcttttatgtttggatattgactgatttggttgtaat 4841970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 56 - 309
Target Start/End: Complemental strand, 35540885 - 35540620
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    ||||||||||| ||||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  35540885 tgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtttcggtgctgtggaatgaaaggaatga 35540786  T
Q  155 caagatttttagaaatagacaaagctttttgcc-----------acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | | |||||||||||||||||||   | ||||           | |||||||||| |||||| |||||||||||||| ||| |||||| ||||||||||    
T  35540785 taggctttttagaaatagacaaagtactgtgcctcaattactagataaagtgaaattaacttcgttgtggtggttaaaggctagtaatgttgtatttagt 35540686  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||| | || ||| | |||||||||| ||| |||| ||||||||||||||||||||||| |||||||    
T  35540685 tttggcacacatcagtggtggtcgagccctcttttatgtctgggtattgactgatttgtttgtaat 35540620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 192 - 309
Target Start/End: Original strand, 24547518 - 24547635
Alignment:
Q  192 agtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtatt 291  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||    
T  24547518 agtgaaatcaacttctttgtagtggttaaaagcttgtaatgctgtatttagttttggtactcataattggtggtcgagcctgctttcatgtctgggtatt 24547617  T
Q  292 gactgatttgattgtaat 309  Q
    ||||||||||||||||||    
T  24547618 gactgatttgattgtaat 24547635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 54 - 309
Target Start/End: Complemental strand, 13352152 - 13351885
Alignment:
Q  54 tttgcaatttattaattatgcaggttgtttgagagggaaacgt-ctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 152  Q
    |||| |||||||||||||||||||||||| ||||| |  |||| | || || ||||| |||||||||||||||||||| || ||||||| || | |||||    
T  13352152 tttgtaatttattaattatgcaggttgttcgagagagcgacgttcattttttcactttatttggttgctttgtgtttcagttttgtggagtgtatggaat 13352053  T
Q  153 gacaagatttttagaaatagacaaagctttttgccacaaa-----------gtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtattta 241  Q
    || | ||||||||||||||||||||||| |||||||||||           || |||| |  |||||||||||||||||||||| |||||| ||||||||    
T  13352052 gataggatttttagaaatagacaaagctctttgccacaaatgctagacaaagttaaataattttctttgtggtggttaaaagctcgtaatgttgtattta 13351953  T
Q  242 gttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    | ||| |||||||||||||||||| || ||||||||||||| |||| ||||||||| ||| |||||||    
T  13351952 gctttggtactcataattggtggttgagcccgctttcatgtttgggcattgactgacttggttgtaat 13351885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 268
Target Start/End: Original strand, 47623513 - 47623593
Alignment:
Q  188 acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcga 268  Q
    ||||||| |||||| ||||||||||||||||||||||| |||||| ||| ||||| | |  ||||||||||||||||||||    
T  47623513 acaaagtaaaatcatcttctttgtggtggttaaaagctagtaatgttgtttttagctatgatactcataattggtggtcga 47623593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 269
Target Start/End: Complemental strand, 6478209 - 6478130
Alignment:
Q  190 aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaa 269  Q
    ||||| ||||||  ||| ||||||||| ||||||||  ||||| ||| |||||||||  |||||||||||||||||||||    
T  6478209 aaagtaaaatcatattccttgtggtggctaaaagctaataatgttgtttttagttttgatactcataattggtggtcgaa 6478130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 303
Target Start/End: Original strand, 37297967 - 37298062
Alignment:
Q  208 ttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgat 303  Q
    ||||||||||| |||||| ||||||  || |||| |||| |||| |||||||||||||||| |||||||| |||| || |||| || ||| |||||    
T  37297967 ttgtggtggttgaaagctagtaatgtagtctttaattttggtacacataattggtggtcgagcccgcttttatgtatgagtatcgattgacttgat 37298062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 295
Target Start/End: Original strand, 16918259 - 16918364
Alignment:
Q  190 aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggta 289  Q
    ||||| ||||||| | | ||||||||||| |||||| ||||    ||||||| |||| |||| |||| ||||||||||| |||||||  |||| |||| |    
T  16918259 aaagtaaaatcaaataccttgtggtggttgaaagctagtaacatagtatttatttttggtacacatagttggtggtcgagcccgcttctatgtttgggca 16918358  T
Q  290 ttgact 295  Q
    ||||||    
T  16918359 ttgact 16918364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 4e-69; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 51 - 309
Target Start/End: Complemental strand, 13396229 - 13395959
Alignment:
Q  51 ttgtttgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacgg 149  Q
    |||| |||||||||||||||| ||||||||||||||| ||  ||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  13396229 ttgtctgcaatttattaattacgcaggttgtttgagaaggcgacggtctttcttccacttgatttggttgctttgtgtttcggtattgtggaatgaaagg 13396130  T
Q  150 aatgacaagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtat 238  Q
    ||||| | |||||||||||||||||||||   | ||||||           |||||||||||||||||||||||||||||||| ||| | ||||||||||    
T  13396129 aatgataggatttttagaaatagacaaagtactctgccacaaatgttagataaagtgaaatcaacttctttgtggtggttaaaggctagcaatgctgtat 13396030  T
Q  239 ttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    |||||||| |||||||| | |||||||||| |||||||| |||| |||||||||||||||||| |||||||    
T  13396029 ttagttttggtactcatcagtggtggtcgagcccgcttttatgtttgggtattgactgatttggttgtaat 13395959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 51 - 309
Target Start/End: Original strand, 41665668 - 41665938
Alignment:
Q  51 ttgtttgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacgg 149  Q
    |||| |||||||||||||||| ||||||||||||||| ||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41665668 ttgtctgcaatttattaattacgcaggttgtttgagaaggcgacgatctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaaagg 41665767  T
Q  150 aatgacaagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtat 238  Q
    ||||| | |||||||||||||||||||||   | ||||||           |||||||||||||||||||||||||||||||| ||| | |||| |||||    
T  41665768 aatgataggatttttagaaatagacaaagtactctgccacaaattttagataaagtgaaatcaacttctttgtggtggttaaaggctagcaatgttgtat 41665867  T
Q  239 ttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    |||||||| |||||||| | |||||||||| |||||||| |||| |||||||||| ||||||| |||||||    
T  41665868 ttagttttggtactcatcagtggtggtcgagcccgcttttatgtttgggtattgattgatttggttgtaat 41665938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 54 - 309
Target Start/End: Original strand, 32567567 - 32567833
Alignment:
Q  54 tttgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 152  Q
    |||||||||||||||||||||||||||||  ||||||   || |||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||    
T  32567567 tttgcaatttattaattatgcaggttgttcaagagggcgtcggtctttcttccacttaatttggttgctttgtgtttgggtgttgtggaatgaaaggaat 32567666  T
Q  153 gacaagatttttagaaatagacaaagctttttgccacaaa-----------gtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtattta 241  Q
    || | |||||||||||||||||||||   |||||||||||           |||||||||||||||||||||||||| |||||| | |||| ||||||||    
T  32567667 gataggatttttagaaatagacaaagtactttgccacaaatgctagataatgtgaaatcaacttctttgtggtggtt-aaagctagcaatgttgtattta 32567765  T
Q  242 gttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    |||||  ||||||| | |||||||||| |||||||| ||||||||||||||||||||||| |||||||    
T  32567766 gttttgatactcatcagtggtggtcgagcccgcttttatgtctgggtattgactgatttggttgtaat 32567833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 56 - 309
Target Start/End: Complemental strand, 7924222 - 7923957
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    ||||||||||| ||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7924222 tgcaatttattcattatgcaggttgttcgagagggcaacggtctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaaaggaatga 7924123  T
Q  155 caagatttttagaaatagacaaagctttttgcc-----------acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | | |||||||||||||||||||   | ||||           | |||||||||| |||||| |||||||||||||| ||| |||||| ||||||||||    
T  7924122 taggctttttagaaatagacaaagtactgtgcctcaattgctagataaagtgaaattaacttcgttgtggtggttaaaggctagtaatgttgtatttagt 7924023  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||| | |||||| | |||||||||| ||| |||| ||||||||||||||||||||||| |||||||    
T  7924022 tttggcactcatcagtggtggtcgagccctcttttatgtctgggtattgactgatttgtttgtaat 7923957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 54 - 309
Target Start/End: Complemental strand, 32266402 - 32266135
Alignment:
Q  54 tttgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 152  Q
    |||||||||||||||||| |||||||||| |||||||   || |||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||    
T  32266402 tttgcaatttattaattacgcaggttgttcgagagggcgtcggtctttcttccacttaatttggttgctttgtgtttgggtgttgtggaatgaaaggaat 32266303  T
Q  153 gacaagatttttagaaatagacaaagctttttgccacaaa-----------gtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtattta 241  Q
    || | |||||||||||||||||||||   |||||||||||           ||||||||||||||| |||||||||||||  || | |||| ||||||||    
T  32266302 gataggatttttagaaatagacaaagtactttgccacaaatgctagataatgtgaaatcaacttctctgtggtggttaaagactagaaatgttgtattta 32266203  T
Q  242 gttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||||| |||||||| | |||||||||| |||||||| ||||| ||||||||||||||||| |||||||    
T  32266202 gttttggtactcatcagtggtggtcgagcccgcttttatgtccgggtattgactgatttggttgtaat 32266135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 56 - 309
Target Start/End: Complemental strand, 171939 - 171674
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    ||||||||||||||||||| ||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  171939 tgcaatttattaattatgccggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaaaggaatga 171840  T
Q  155 caagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | | ||||| |||||||||| ||   ||||||||           ||||||||||||||||||||||| |||||||| ||| |||||| ||||||||||    
T  171839 taggctttttcgaaatagacagagtactttgccactattgctagataaagtgaaatcaacttctttgtgatggttaaaggctagtaatgttgtatttagt 171740  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||| | |||||  | |||||||| | |||||||| |||| ||||| ||||||||||||||||||||    
T  171739 tttggcactcaacagtggtggtcaagcccgcttttatgtttgggtgttgactgatttgattgtaat 171674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 56 - 299
Target Start/End: Complemental strand, 9922437 - 9922182
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacgt-ctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    |||||||||||||||||||||| |||| |||||||  |||| | ||||| || ||||||||| |||||  ||||||||||||||||||||||||||||||    
T  9922437 tgcaatttattaattatgcaggatgttcgagagggcgacgttccttctttcatttgatttggctgcttgttgtttcggtgttgtggaatgaacggaatga 9922338  T
Q  155 caagatttttagaaatagacaaagctttttgccacaaa-----------gtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | | ||||||||||||||||||| | |||||||||||           ||||||||||||||||||||||||||||| |||||||||| ||| ||||||    
T  9922337 aaggctttttagaaatagacaaagttctttgccacaaatgctagataaagtgaaatcaacttctttgtggtggttaaaggcttgtaatgttgtttttagt 9922238  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatt 299  Q
    ||| |||||||  | |||||||||| ||||||||| ||| ||||||||||||||||    
T  9922237 tttggtactcaccagtggtggtcgagcccgctttcttgtttgggtattgactgatt 9922182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 56 - 309
Target Start/End: Complemental strand, 20496920 - 20496655
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    ||||||||||| ||||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  20496920 tgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtttcggtgctgtggaatgaaaggaatga 20496821  T
Q  155 caagatttttagaaatagacaaagctttttgcc-----------acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | | |||||||||||||||||||   | ||||           | |||||||||| |||||| |||||||||||||| ||| |||||| ||||||||||    
T  20496820 taggctttttagaaatagacaaagtactgtgcctcaattactagataaagtgaaattaacttcgttgtggtggttaaaggctagtaatgttgtatttagt 20496721  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||| | || ||| | |||||||||| ||| |||| ||||||||||||||||||||||| |||||||    
T  20496720 tttggcacacatcagtggtggtcgagccctcttttatgtctgggtattgactgatttgtttgtaat 20496655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 56 - 301
Target Start/End: Complemental strand, 8299639 - 8299382
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    ||||||||||| ||||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  8299639 tgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtttcggtgctgtggaatgaaaggaatga 8299540  T
Q  155 caagatttttagaaatagacaaagctttttgcc-----------acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | | |||||||||||||||| ||   | ||||           | |||||||||| |||||| ||||||||| |||| ||| |||||| ||||||||||    
T  8299539 taggctttttagaaatagacatagtactgtgcctcaattgctagataaagtgaaattaacttcgttgtggtggctaaaggctagtaatgttgtatttagt 8299440  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttg 301  Q
    ||| | |||||| | |||||||||| ||| |||| |||||||||||||||||||||||    
T  8299439 tttggcactcatcagtggtggtcgagccctcttttatgtctgggtattgactgatttg 8299382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 190 - 297
Target Start/End: Complemental strand, 5181359 - 5181252
Alignment:
Q  190 aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggta 289  Q
    ||||| |||||| ||| ||||||||||||||||| | |||||| ||||||||| ||||||||||||| |||||||||| |||||||||||||| |||| |    
T  5181359 aaagtaaaatcatcttatttgtggtggttaaaagttagtaatgttgtatttagctttagtactcatacttggtggtcgtacccgctttcatgtttgggca 5181260  T
Q  290 ttgactga 297  Q
    ||||||||    
T  5181259 ttgactga 5181252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 268
Target Start/End: Original strand, 34137411 - 34137491
Alignment:
Q  188 acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcga 268  Q
    ||||||| |||||| |||| |||||||||||||||||| |||||| ||| ||||| ||| |||||||||||||||||||||    
T  34137411 acaaagtaaaatcatcttcattgtggtggttaaaagctagtaatgttgtttttagctttggtactcataattggtggtcga 34137491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 268
Target Start/End: Original strand, 29733403 - 29733478
Alignment:
Q  193 gtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcga 268  Q
    |||||||||| ||||||||||||||| |||||| ||||||  || |||| |||| ||||||||| |||||||||||    
T  29733403 gtgaaatcaaattctttgtggtggttgaaagctagtaatgtggtctttacttttggtactcatagttggtggtcga 29733478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 12257920 - 12258008
Alignment:
Q  209 tgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactga 297  Q
    |||||||||| |||||| |||| | ||| | ||||||| |||||||||| ||||||||||||||||| | |||| || |||| ||||||    
T  12257920 tgtggtggttgaaagctagtaacgttgtttctagttttggtactcataactggtggtcgaacccgctcttatgtatgagtatcgactga 12258008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 297
Target Start/End: Original strand, 12265312 - 12265400
Alignment:
Q  209 tgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactga 297  Q
    |||||||||| |||||| |||| | ||| | ||||||| |||||||||| ||||||||||||||||| | |||| || |||| ||||||    
T  12265312 tgtggtggttgaaagctagtaacgttgtttctagttttggtactcataactggtggtcgaacccgctcttatgtatgagtatcgactga 12265400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 282
Target Start/End: Complemental strand, 2529558 - 2529484
Alignment:
Q  208 ttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgt 282  Q
    ||||||||||| |||||| ||||||  || |||| |||| |||| ||| |||||||||||| |||||||||||||    
T  2529558 ttgtggtggttgaaagctagtaatgtggtttttaattttggtacacatgattggtggtcgagcccgctttcatgt 2529484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 287
Target Start/End: Complemental strand, 25090077 - 25089979
Alignment:
Q  190 aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttag-tactcataattggtggtcgaacccgctttcatgtctggg 287  Q
    ||||| ||||||| ||| ||||||||| | |||||| ||||||  || |||| |||| | |||||||||||||||||||| ||||||| ||||| ||||    
T  25090077 aaagtaaaatcaaattccttgtggtggctgaaagctagtaatgtggtctttacttttgggtactcataattggtggtcgagcccgcttgcatgtatggg 25089979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 28415804 - 28415727
Alignment:
Q  220 aaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactga 297  Q
    |||||| ||||||  || |||| |||| |||| |||||||||||||||| ||||||||||||| |||| || ||||||    
T  28415804 aaagctagtaatgtggtctttaattttggtacacataattggtggtcgagcccgctttcatgtatgggcatcgactga 28415727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 282
Target Start/End: Complemental strand, 13199795 - 13199721
Alignment:
Q  208 ttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgt 282  Q
    ||||||||||  |||||| ||||||  || |||| |||| |||| |||||||||||||||| |||||||| ||||    
T  13199795 ttgtggtggtcgaaagctagtaatgtggtctttaattttggtacacataattggtggtcgagcccgcttttatgt 13199721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 43270218 - 43270185
Alignment:
Q  123 tgtgtttcggtgttgtggaatgaacggaatgaca 156  Q
    |||||||||||||| |||||||||||||||||||    
T  43270218 tgtgtttcggtgttatggaatgaacggaatgaca 43270185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 130; Significance: 2e-67; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 54 - 301
Target Start/End: Complemental strand, 25824849 - 25824590
Alignment:
Q  54 tttgcaatttattaattatgcaggttgtttgagagggaaacgt-ctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 152  Q
    ||||||||||||||||||||||||||||| |||||||  |||| ||||||| || ||||||||| |||||||||||||||||||||||||||||| ||||    
T  25824849 tttgcaatttattaattatgcaggttgttcgagagggcgacgttctttctttcatttgatttggctgctttgtgtttcggtgttgtggaatgaacagaat 25824750  T
Q  153 gacaagatttttagaaatagacaaagctttttgccacaaa-----------gtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtattta 241  Q
    || | ||||||||||||||||||| | | |||||| ||||           ||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  25824749 gataggatttttagaaatagacaatgttctttgcctcaaatgctagataaagtgaaatcaacttctttgtggtggttaaaggcttgtaatgttgtattta 25824650  T
Q  242 gttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttg 301  Q
    ||||| ||||||||   |||||||||| ||||||||||||||||| ||||||||||||||    
T  25824649 gttttggtactcatcggtggtggtcgagcccgctttcatgtctggttattgactgatttg 25824590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 54 - 309
Target Start/End: Complemental strand, 42927969 - 42927702
Alignment:
Q  54 tttgcaatttattaattatgcaggttgtttgagagggaaacgt-ctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 152  Q
    ||||||||||||||||||||||||||||| |||||||  |||| | || |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  42927969 tttgcaatttattaattatgcaggttgttcgagagggcgacgttcatttttccacttgatttggttgctttgtgtttcggttttgtggaatgaacggaat 42927870  T
Q  153 gacaagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtattta 241  Q
    ||||| ||| |||||||| ||||||||| ||||||||           ||||| |||||| ||||||||||||||||||||||| |||||| ||||||||    
T  42927869 gacaatattcttagaaattgacaaagctctttgccacaaatgctagataaagttaaatcatcttctttgtggtggttaaaagctcgtaatgttgtattta 42927770  T
Q  242 gttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    | |||  |||||||||||||||||||| ||| |||| |||| |||| ||||||||||||| |||||||    
T  42927769 gctttgatactcataattggtggtcgagcccacttttatgtttggggattgactgatttggttgtaat 42927702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 54 - 309
Target Start/End: Original strand, 19255425 - 19255692
Alignment:
Q  54 tttgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 152  Q
    |||||||||||||||||| |||||||||| ||||  |  ||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19255425 tttgcaatttattaattacgcaggttgttcgagattgcgacgatcatttttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 19255524  T
Q  153 gacaagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtattta 241  Q
    ||||| ||||||||||||||| |||||| ||||||||           ||||| |||||| |||||||||||||||||||| ||  ||||| ||||||||    
T  19255525 gacaatatttttagaaatagaaaaagctctttgccacatatgttagataaagtcaaatcatcttctttgtggtggttaaaacctcataatgttgtattta 19255624  T
Q  242 gttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||||| ||||||||| ||||||||||| ||||||||||||| |||| ||||||||| ||| |||||||    
T  19255625 gttttggtactcatatttggtggtcgagcccgctttcatgtttgggcattgactgacttggttgtaat 19255692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 54 - 309
Target Start/End: Complemental strand, 23238221 - 23237954
Alignment:
Q  54 tttgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 152  Q
    |||||||||||||||||| |||||||||| |||||||   || |||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||    
T  23238221 tttgcaatttattaattacgcaggttgttcgagagggcgtcggtctttcttccacttaatttggttgctttgtgttttggtgttgtggaatgaaaggaat 23238122  T
Q  153 gacaagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtattta 241  Q
    || | |||||||||||||||||||||   ||||||||           || ||||||||||||||||||||||||||||| ||| | |||| ||| ||||    
T  23238121 gataggatttttagaaatagacaaagtactttgccacagatgctagataatgtgaaatcaacttctttgtggtggttaaaggctagcaatgttgttttta 23238022  T
Q  242 gttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||||| |||||||| | |||||||||| |||||||| ||||||||||||||||||||||| |||||||    
T  23238021 gttttggtactcatcagtggtggtcgagcccgcttttatgtctgggtattgactgatttggttgtaat 23237954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 56 - 299
Target Start/End: Original strand, 35984095 - 35984349
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacgt-ctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    ||||||||||||||||||||||||||| |||||||  |||| ||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||    
T  35984095 tgcaatttattaattatgcaggttgttcgagagggcgacgttctttctttcatttgatttggctgctttgtgtttcggtgttgtggaatgaacggaatga 35984194  T
Q  155 caagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | || |||||||||||||||||| | ||||||||           |||||||||||||||||||||||||||||||| |||||||||| ||| ||||||    
T  35984195 tagga-ttttagaaatagacaaagttctttgccacaaatgctagataaagtgaaatcaacttctttgtggtggttaaaggcttgtaatgttgtttttagt 35984293  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatt 299  Q
    ||| |||||||| | |||||||||| ||| ||||| ||| ||||||||||||||||    
T  35984294 tttggtactcatcagtggtggtcgagcccactttcttgtttgggtattgactgatt 35984349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 57 - 309
Target Start/End: Original strand, 12820254 - 12820519
Alignment:
Q  57 gcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatgac 155  Q
    |||||||||||||||||||||||||| |||||||  ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||     
T  12820254 gcaatttattaattatgcaggttgttcgagagggcgacggtctttcttccatttgatttggttgctttgtgtttcggtgttgtggaatgaaaggaatgat 12820353  T
Q  156 aagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagtt 244  Q
    | | |||||||||||||||||||  || ||||||           ||||||||||||||||| |||||||||||||| ||| |||||| |||||||||||    
T  12820354 aggctttttagaaatagacaaagtattgtgccacaattgctagataaagtgaaatcaacttcgttgtggtggttaaaggctggtaatgttgtatttagtt 12820453  T
Q  245 ttagtactcataattggtggtcgaacccgctttcatgtctgggt-attgactgatttgattgtaat 309  Q
    || | |||||| | |||||||||| |||||||| ||||||||||  |||||||||||| |||||||    
T  12820454 ttggcactcatcagtggtggtcgagcccgcttttatgtctgggtgtttgactgatttgtttgtaat 12820519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 57 - 309
Target Start/End: Complemental strand, 12825034 - 12824769
Alignment:
Q  57 gcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatgac 155  Q
    |||||||||||||||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||     
T  12825034 gcaatttattaattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgttccggtgttgtggaatgaaaggaatgat 12824935  T
Q  156 aagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagtt 244  Q
    | | |||||||||||||||||||  || | ||||           ||||||||||||||||| |||||||||||||| ||| |||||| |||||||||||    
T  12824934 aggctttttagaaatagacaaagtattgtaccacaattgctagataaagtgaaatcaacttcgttgtggtggttaaaggctagtaatgttgtatttagtt 12824835  T
Q  245 ttagtactcataattggtggtcgaacccgctttcatgtctgggta-ttgactgatttgattgtaat 309  Q
    || | |||||| | |||||||||| |||||||| ||||||||||| |||||||||||| |||||||    
T  12824834 ttggcactcatcagtggtggtcgagcccgcttttatgtctgggtatttgactgatttgtttgtaat 12824769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 57 - 309
Target Start/End: Original strand, 30732619 - 30732884
Alignment:
Q  57 gcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatgac 155  Q
    |||||||||||||||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||     
T  30732619 gcaatttattaattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaaaggaatgat 30732718  T
Q  156 aagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagtt 244  Q
    | | |||||||||||||||||||  || ||||||           ||||||||||||||||| ||||||||||||||  || |||||| |||||||||||    
T  30732719 aggctttttagaaatagacaaagtattgtgccacaattgctagataaagtgaaatcaacttcgttgtggtggttaaagactagtaatgttgtatttagtt 30732818  T
Q  245 ttagtactcataattggtggtcgaacccgctttcatgtctgggta-ttgactgatttgattgtaat 309  Q
    || | |||||| | |||||||||| || ||||| ||||||||||| |||||||||||| |||||||    
T  30732819 ttggcactcatcagtggtggtcgagcctgcttttatgtctgggtatttgactgatttgtttgtaat 30732884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 56 - 309
Target Start/End: Complemental strand, 42513556 - 42513291
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    ||||||||||| ||||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  42513556 tgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaaaggaatga 42513457  T
Q  155 caagatttttagaaatagacaaagctttttgcc-----------acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | | |||||||||||||||||||  || ||||           | |||||||||| |||||| |||||||||||||| ||| |||||| ||||||||||    
T  42513456 taggctttttagaaatagacaaagtattgtgcctcaattgctagataaagtgaaattaacttcgttgtggtggttaaaggctagtaatgttgtatttagt 42513357  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||| | |||||| | |||||||||| ||| |||| ||||||||||||||||||||||| |||||||    
T  42513356 tttggcactcatcagtggtggtcgagccctcttttatgtctgggtattgactgatttgtttgtaat 42513291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 56 - 309
Target Start/End: Original strand, 27117465 - 27117730
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    ||||||||||||||||||  ||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27117465 tgcaatttattaattatgtcggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaaaggaatga 27117564  T
Q  155 caagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | | |||||||||||||||| ||   ||||||||           |||||||||||||||||||||||||||||||| ||| |||||| ||||||||||    
T  27117565 taggctttttagaaatagacagagtactttgccacaattgctagataaagtgaaatcaacttctttgtggtggttaaaggctagtaatgttgtatttagt 27117664  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||| | |||||  | |||||||||| || ||||| |||| ||||| ||||||||||||||||||||    
T  27117665 tttggcactcaacagtggtggtcgagcctgcttttatgtttgggtgttgactgatttgattgtaat 27117730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 54 - 309
Target Start/End: Complemental strand, 8227864 - 8227597
Alignment:
Q  54 tttgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaat 152  Q
    |||||||||||||||||| |||||||||| |||||||   || |||||||||||||| ||||||||||||||||||| |||| ||||||||||| |||||    
T  8227864 tttgcaatttattaattacgcaggttgttcgagagggcgtcggtctttcttccacttaatttggttgctttgtgtttgggtgatgtggaatgaaaggaat 8227765  T
Q  153 gacaagatttttagaaatagacaaagctttttgccacaaa-----------gtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtattta 241  Q
    || | |||||||||||||| ||||||    |||||| |||           ||||||||||| ||||||||||||||||| ||| | |||| ||||||||    
T  8227764 gatatgatttttagaaataaacaaagtacgttgccataaatgcttgataatgtgaaatcaacctctttgtggtggttaaaggctagcaatgttgtattta 8227665  T
Q  242 gttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||||| |||||||| | |||||||||| |||||||| |||||||| |||||||||||||| |||||||    
T  8227664 gttttggtactcatcagtggtggtcgagcccgcttttatgtctggttattgactgatttggttgtaat 8227597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 56 - 299
Target Start/End: Original strand, 28535979 - 28536234
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacgt-ctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    ||||||||||||||||||| ||||||| |||||||  |||| | ||||| || ||||||||| | |||  |||||||||||||||||||||||| |||||    
T  28535979 tgcaatttattaattatgctggttgttcgagagggcgacgttccttctttcatttgatttggctacttgttgtttcggtgttgtggaatgaacgaaatga 28536078  T
Q  155 caagatttttagaaatagacaaagctttttgccacaaa-----------gtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | ||||||||||||||||| ||| | |||||||||||           ||||||||||| ||||||||||||||||| |||||||||| ||| ||||||    
T  28536079 taggatttttagaaatagacgaagttctttgccacaaatgctagataaagtgaaatcaacgtctttgtggtggttaaaggcttgtaatgttgtttttagt 28536178  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatt 299  Q
    ||| |||||||| | |||||||||| ||||||||| ||| ||||||||||||||||    
T  28536179 tttggtactcatcagtggtggtcgagcccgctttcttgtttgggtattgactgatt 28536234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 56 - 309
Target Start/End: Complemental strand, 3418619 - 3418354
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    ||||||||||| ||||||||||||||| |||||||  ||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||| |||||||    
T  3418619 tgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccatttgatttggttgctttgtgtttcggtgctgtggaatgaaaggaatga 3418520  T
Q  155 caagatttttagaaatagacaaagctttttgcc-----------acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | | |||||||||||||||||||   | ||||           | |||||||||| |||||| |||||||||||||| ||| |||||| ||||||||||    
T  3418519 taggctttttagaaatagacaaagtactgtgcctcaattactagataaagtgaaattaacttcgttgtggtggttaaaggctagtaatgttgtatttagt 3418420  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||| | || ||| | ||||| |||| ||| |||| | |||| |||||||||||||||| |||||||    
T  3418419 tttggcacacatcagtggtgatcgagccctcttttaagtctaggtattgactgatttgtttgtaat 3418354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 136 - 299
Target Start/End: Complemental strand, 31641512 - 31641338
Alignment:
Q  136 tgtggaatgaacggaatgacaagatttttagaaatagacaaagctttttgccacaaa-----------gtgaaatcaacttctttgtggtggttaaaagc 224  Q
    ||||||||||||||||||| | ||||||||||||||||||||| | |||||||||||           |||||||||||||| |||||||||||||| ||    
T  31641512 tgtggaatgaacggaatgataggatttttagaaatagacaaagttctttgccacaaatgctagataaagtgaaatcaacttcgttgtggtggttaaaggc 31641413  T
Q  225 ttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatt 299  Q
    |||||||| ||||||||||||| |||||||  | |||||||||| ||||||||| ||| ||||||||||||||||    
T  31641412 ttgtaatgttgtatttagttttggtactcaccagtggtggtcgagcccgctttcttgtttgggtattgactgatt 31641338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 26072565 - 26072474
Alignment:
Q  208 ttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatt 299  Q
    ||||||||||| |||||| |||||| ||| ||||||||   ||||||||||||||||||||||||||| | |||| ||||||||||||||||    
T  26072565 ttgtggtggttgaaagctagtaatgttgtctttagtttcgatactcataattggtggtcgaacccgctcttatgtatgggtattgactgatt 26072474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 308
Target Start/End: Complemental strand, 32228641 - 32228376
Alignment:
Q  55 ttgcaatttattaattatgcaggttgtttgagagggaaacgt-ctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatg 153  Q
    |||||||||||||||||||||||||||||||||| |  |||| | || |||||  | |||||| | || ||||||| | | ||||||| ||| |||||||    
T  32228641 ttgcaatttattaattatgcaggttgtttgagagcgcgacgttcctttttccatctaatttggctcctgtgtgtttggattttgtggactgagcggaatg 32228542  T
Q  154 acaagatttttagaaatagacaaagctttttgccaca-----------aagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttag 242  Q
    | ||  |||| ||||||| |||||||| | | || ||           |||| ||||||  || |||||||||||| |||||| |||||| ||| |||||    
T  32228541 ataaagttttcagaaataaacaaagctctctaccgcatatgttagataaagtaaaatcatattttttgtggtggttgaaagctagtaatgttgtttttag 32228442  T
Q  243 ttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaa 308  Q
    |||| |||||||||||||||| |||||||||||   |||| ||||||| |||| |||  |||||||    
T  32228441 ttttggtactcataattggtgatcgaacccgctcaaatgtatgggtatcgactaattgtattgtaa 32228376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 8941876 - 8941943
Alignment:
Q  208 ttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgct 275  Q
    ||||||||| | |||||| ||||||  || ||||||||| ||| ||||||||||||||||||||||||    
T  8941876 ttgtggtggctgaaagctagtaatgtagtttttagttttggtattcataattggtggtcgaacccgct 8941943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 18090230 - 18090321
Alignment:
Q  208 ttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatt 299  Q
    ||||||||||| || ||| |||||| ||  ||||| ||||||||||| ||||||||||| || ||||||   ||||||||||||| ||||||    
T  18090230 ttgtggtggttgaaggctggtaatgttgcctttagatttagtactcaaaattggtggtcaaatccgcttgtctgtctgggtattggctgatt 18090321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 33169348 - 33169263
Alignment:
Q  190 aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgct 275  Q
    ||||| ||||||  ||| ||||||||| | |||||| ||||||  || ||||||||| ||| | ||||||||||||||||||||||    
T  33169348 aaagtaaaatcatgttccttgtggtggatgaaagctagtaatgtagtttttagttttggtatttataattggtggtcgaacccgct 33169263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 268
Target Start/End: Complemental strand, 29142492 - 29142412
Alignment:
Q  188 acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcga 268  Q
    ||||||| |||||| | |||||||||||||||||||||  ||||| ||| ||||| | | |||||| |||||| |||||||    
T  29142492 acaaagtaaaatcatcatctttgtggtggttaaaagctaataatgttgtttttagctctggtactcttaattgatggtcga 29142412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 12032467 - 12032517
Alignment:
Q  259 tggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    |||||||||| ||| |||| ||||||||||||||| ||||||| |||||||    
T  12032467 tggtggtcgagcccacttttatgtctgggtattgattgatttgtttgtaat 12032517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 275
Target Start/End: Complemental strand, 24407611 - 24407558
Alignment:
Q  222 agcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgct 275  Q
    |||| ||||| |||| ||||||||| | | ||||||||||||||||||||||||    
T  24407611 agctagtaattctgtttttagttttggaattcataattggtggtcgaacccgct 24407558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 290
Target Start/End: Original strand, 18359556 - 18359640
Alignment:
Q  206 ctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtat 290  Q
    ||||||||||||| |||||| ||||||  || |||| |||| |||| |||||||| || ||||  ||||||| |||| |||||||    
T  18359556 ctttgtggtggttgaaagctagtaatgtagtctttaattttggtacacataattgatgatcgagtccgcttttatgtatgggtat 18359640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 56 - 309
Target Start/End: Original strand, 106147 - 106412
Alignment:
Q  56 tgcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatga 154  Q
    ||||||||||| ||||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  106147 tgcaatttattcattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaaaggaatga 106246  T
Q  155 caagatttttagaaatagacaaagctttttgcc-----------acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagt 243  Q
     | | |||||||||||||||||||  || ||||           | |||||||||| |||||| |||||||||||||| ||| |||||| ||||||||||    
T  106247 taggctttttagaaatagacaaagtattgtgcctcaattgctagataaagtgaaattaacttcgttgtggtggttaaaggctagtaatgttgtatttagt 106346  T
Q  244 tttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||| | |||||| | |||||||||| ||| |||| ||||||||||||||||||||||| |||||||    
T  106347 tttggcactcatcagtggtggtcgagccctcttttatgtctgggtattgactgatttgtttgtaat 106412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 57 - 309
Target Start/End: Original strand, 11510 - 11774
Alignment:
Q  57 gcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatgac 155  Q
    |||||||||||||||||| ||||||| |||||||   || ||||||||||||||||||||  |||||||||||||| || |||||||||||  ||||||     
T  11510 gcaatttattaattatgccggttgttcgagagggcggcggtctttcttccacttgatttgactgctttgtgtttcgatgctgtggaatgaaaagaatgat 11609  T
Q  156 aagatttttagaaatagacaaagctttttgccacaa-----------agtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagtt 244  Q
    | | |||||||||||||||||||   ||||||||||           |||||||||||||||||||||||||||||| ||| |||||| |||||||||||    
T  11610 aggctttttagaaatagacaaagtactttgccacaatttctagataaagtgaaatcaacttctttgtggtggttaaaggctagtaatgttgtatttagtt 11709  T
Q  245 ttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    ||   |||||| | |||||||||| |||||||| |||| ||||||||||||||||||||||||||    
T  11710 ttgtcactcatcagtggtggtcgagcccgcttttatgtttgggtattgactgatttgattgtaat 11774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 57 - 309
Target Start/End: Complemental strand, 4552004 - 4551747
Alignment:
Q  57 gcaatttattaattatgcaggttgtttgagagggaaacg-tctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatgac 155  Q
    |||||||||||||||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||     
T  4552004 gcaatttattaattatgcaggttgttcgagagggcgacggtctttcttccacttgatttggttgctttgtgtttcggtgttgtggaatgaaagaaatgat 4551905  T
Q  156 aagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagtt 244  Q
    | | |||||||||||||||||||   | ||||||           ||||||||||||||||| |||||||||||||| ||| |||||| |||||||||||    
T  4551904 aggctttttagaaatagacaaagtactgtgccacaattactagataaagtgaaatcaacttcgttgtggtggttaaaggctagtaatgttgtatttagtt 4551805  T
Q  245 ttagtactcataattggtggtcgaacccgctttcatgtctgggta-ttgactgatttgattgtaat 309  Q
    || | |||||        |||||| |||||||| ||||||||||| |||||||||||| |||||||    
T  4551804 ttggcactca--------ggtcgagcccgcttttatgtctgggtatttgactgatttgtttgtaat 4551747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 102 - 297
Target Start/End: Complemental strand, 41206795 - 41206589
Alignment:
Q  102 ttccacttgatttggttgctttgtgtttcggtgttgtggaatgaacggaatgacaagatttttagaaatagacaaagctttttgccac-----------a 190  Q
    |||||||||||||| ||||||||||||||||| ||| |||||||||| ||||| | ||||||||||||||||||||||| ||| ||||           |    
T  41206795 ttccacttgatttgattgctttgtgtttcggttttgaggaatgaacgaaatgaaatgatttttagaaatagacaaagctctttaccacacatgttagata 41206696  T
Q  191 aagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtat 290  Q
    |||| |||||| ||||||| |||||||||||| || |||||| ||||||||| ||| ||||||||| ||| ||||||||||| ||||||||| || | ||    
T  41206695 aagtcaaatcatcttctttatggtggttaaaatctcgtaatgttgtatttagctttggtactcatatttgatggtcgaaccccctttcatgtttgtgcat 41206596  T
Q  291 tgactga 297  Q
    |||||||    
T  41206595 tgactga 41206589  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 282
Target Start/End: Complemental strand, 15917421 - 15917251
Alignment:
Q  123 tgtgtttcggtgttgtggaatgaacggaatgacaagatttttagaaatagacaaagctttttgccac-----------aaagtgaaatcaacttctttgt 211  Q
    ||||||| ||| ||||||||||||||||||||||   | ||||| ||||||||||||| | | ||||           ||||| ||||||  ||||||||    
T  15917421 tgtgtttgggttttgtggaatgaacggaatgacagactatttaggaatagacaaagctctataccacatatgttagataaagtaaaatcatattctttgt 15917322  T
Q  212 ggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgt 282  Q
    ||||||| |||||| |||||| ||| ||||||||| ||||||||||||||||||||| |||||||| ||||    
T  15917321 ggtggttgaaagctagtaatgttgtctttagttttggtactcataattggtggtcgagcccgcttttatgt 15917251  T

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Target: chr2; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 188 - 287
Target Start/End: Original strand, 17765410 - 17765509
Alignment:
Q  188 acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctggg 287  Q
    ||||||| |||||| ||||||||||| ||||||||||| |||||| ||| ||||||||| ||||||||| ||||||||||| ||| |||| |||| ||||    
T  17765410 acaaagtaaaatcatcttctttgtgggggttaaaagctagtaatgttgtttttagttttggtactcatagttggtggtcgagcccacttttatgtatggg 17765509  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 15391815 - 15391724
Alignment:
Q  208 ttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatt 299  Q
    ||||||||||| |||||| |||| ||||  ||||||||  |||||||||||||||||||||||||||| | |||| ||||||| ||||||||    
T  15391815 ttgtggtggttgaaagctagtaaagctgactttagtttcggtactcataattggtggtcgaacccgctcttatgtatgggtatcgactgatt 15391724  T

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Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 268
Target Start/End: Complemental strand, 28252413 - 28252333
Alignment:
Q  188 acaaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcga 268  Q
    ||||||| |||||| ||||||||||||||||||||||| |||||  ||| ||||| | | |||||||||||||||||||||    
T  28252413 acaaagtaaaatcatcttctttgtggtggttaaaagctagtaatattgtttttagctatggtactcataattggtggtcga 28252333  T

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Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 290
Target Start/End: Complemental strand, 12645208 - 12645126
Alignment:
Q  208 ttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtat 290  Q
    |||||||||||||||||| ||||||  || |||| |||| |||| |||||||||||||||| |||| |||||||| |||||||    
T  12645208 ttgtggtggttaaaagctagtaatgtggtctttaattttggtacacataattggtggtcgagcccgttttcatgtatgggtat 12645126  T

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Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 293
Target Start/End: Complemental strand, 40176360 - 40176257
Alignment:
Q  190 aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggta 289  Q
    ||||| ||||||| |||  |||||||||| |||||| ||||||  || |||| |||| | ||||||||||||||||||| |||||||  |||| |||| |    
T  40176360 aaagtaaaatcaaattccatgtggtggttgaaagctagtaatgtggtctttacttttggaactcataattggtggtcgagcccgcttgtatgtatgggca 40176261  T
Q  290 ttga 293  Q
    ||||    
T  40176260 ttga 40176257  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 276
Target Start/End: Original strand, 33516234 - 33516320
Alignment:
Q  190 aaagtgaaatcaacttctttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctt 276  Q
    ||||| ||||||| |||  |||||||||| |||||| |||| |  || |||| |||| ||||||||||||||||||||| |||||||    
T  33516234 aaagtaaaatcaaattccatgtggtggttgaaagctagtaacgtggtctttacttttggtactcataattggtggtcgagcccgctt 33516320  T

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Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 309
Target Start/End: Original strand, 40914380 - 40914448
Alignment:
Q  241 agttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    |||||| | |||||| | |||||||||  || ||||| ||||||||||||||||||||||| |||||||    
T  40914380 agttttggcactcatcagtggtggtcgggcctgcttttatgtctgggtattgactgatttgtttgtaat 40914448  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Original strand, 38604840 - 38604909
Alignment:
Q  207 tttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctt 276  Q
    |||||||||||| |||||| ||||||  |  |||| |||| | || ||||||||||||||||||||||||    
T  38604840 tttgtggtggttgaaagctagtaatgtggactttatttttggaacacataattggtggtcgaacccgctt 38604909  T

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Target: scaffold0511 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 127 - 309
Target Start/End: Original strand, 5788 - 5981
Alignment:
Q  127 tttcggtgttgtggaatgaacggaatgacaagatttttagaaatagacaaagctttttgccacaaa-----------gtgaaatcaacttctttgtggtg 215  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||| |||    |||||||||||           |||||||||||||||||||||||    
T  5788 tttcggtgttgtggaatgaaaggaatgataagatttttagaaatagataaactaatttgccacaaatgctagataaagtgaaatcaacttctttgtggtg 5887  T
Q  216 gttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatttgattgtaat 309  Q
    |||||| ||| | |||||||||||||||||| |||||||| | |||||||| | |||||||| |||||  |||||||||| ||||| |||||||    
T  5888 gttaaaggctagcaatgctgtatttagttttggtactcatcactggtggtcaagcccgcttttatgtccaggtattgactaatttggttgtaat 5981  T

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Target: scaffold0161 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 6477 - 6568
Alignment:
Q  208 ttgtggtggttaaaagcttgtaatgctgtatttagttttagtactcataattggtggtcgaacccgctttcatgtctgggtattgactgatt 299  Q
    ||||||||||| |||||| |||||| ||||||||||||| ||||||| ||||||||||| || | ||||   ||| ||||||||| ||||||    
T  6477 ttgtggtggttgaaagctagtaatgttgtatttagttttggtactcaaaattggtggtcaaatctgcttgtctgtgtgggtattggctgatt 6568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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