View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390-INSERTION-5 (Length: 674)
Name: NF1390-INSERTION-5
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390-INSERTION-5 |
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Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 109 - 652
Target Start/End: Complemental strand, 29250464 - 29249919
Alignment:
| Q |
109 |
aaagggtaaaggactcaaaaccttagggtcaacaatgctacaagactcatatgtgacttcaatgaagctaatcgcgaacctgtccctcaaacagaaccaa |
208 |
Q |
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| T |
29250464 |
aaagggtaaaggactcaaaaccttagggtcaacaatgctacaagactcgtatgtgacttcaatgaagctaatcgcaaacccgtccctcaaacagaaccaa |
29250365 |
T |
|
| Q |
209 |
tcccaactgtagcgaactgatttcctcctcaagataactgggcaaaactgaatgtagatgcaggttgctttaatgatggctttgcggttggtgactagtt |
308 |
Q |
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| T |
29250364 |
tcccagctgtagcgaactggtttcctcctcaagataactgggcaaaactgaatgtagatgcaggttgctttaatgatggctttacggttggcgactagtc |
29250265 |
T |
|
| Q |
309 |
ataagagatcacacgggagctgtcagtttggctgcttgcaaaagagaagaagtggatttgagtcctatgttggcggaggcacttggtttgagatggtgtc |
408 |
Q |
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| T |
29250264 |
ataagagatcacacgggagctgtcagtttggctgcttgcaaaagagaagaagtggatttgagtcctatgttggcggaggcacttggtttgagatggtgtc |
29250165 |
T |
|
| Q |
409 |
tctcagttgcaaaatatttgtgtttaaacaaggtggtggtggagtccaatgcagctgctgttgtggattgtatcaatgtcaaggccataatggctgtatt |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| | | |
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| T |
29250164 |
tctcagttgcaaaatatttgtgtttaaacaaggtggtggtggagttcaatgcagctgctgttgtggattgtatcaatgtcaaggctataatggctgcagt |
29250065 |
T |
|
| Q |
509 |
tgatccaattatccaaga-ttgctgttgctcatgagttagttcaaatgtccaacgtagttggctctaaaaattgggtgggggaatgtcccacacc-aatt |
606 |
Q |
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| T |
29250064 |
tgatccaattatccaagatttgctgttgctcatgagttagttcaaatgtccaacatagttggctctaaaaattgggt-ggggaatgtcccacaccaaatt |
29249966 |
T |
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| Q |
607 |
tctcgcgaccctgtttctgtttttatctaatg-aatatttgcacttc |
652 |
Q |
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| T |
29249965 |
tctcgcgaccctgtttctgtttttatctaatgaaatatttgcacttc |
29249919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 4e-86; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 138 - 534
Target Start/End: Original strand, 31438513 - 31438910
Alignment:
| Q |
138 |
caacaatgctacaagactcatatgtgacttcaatgaagctaatcgcgaacctgtccctcaaacagaaccaatcccaactgtagcgaactgatttcctcct |
237 |
Q |
| |
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| T |
31438513 |
caacagtgctacaacactcatttgtgacttcattgaagccaatcacaaacctgttcttcaatctgttccaattccaggtgctgcaaactggcttcctcct |
31438612 |
T |
|
| Q |
238 |
caagataactgggcaaaactgaatgtagatgcaggttgctttaatgatggctttgc-ggttggtgactagttataagagatcacacgggagctgtcagtt |
336 |
Q |
| |
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||| |||||| | ||||| | |||||||||||| |||||||||||||||| ||| | |||||| ||||||| || |||||||| | || |||||||||| |
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| T |
31438613 |
caaaataactagacaaaagtaaatgtagatgcaagttgctttaatgatggatttaccggttggggactagtcattagagatcatattggggctgtcagtt |
31438712 |
T |
|
| Q |
337 |
tggctgcttgcaaaagagaagaagtggatttgagtcctatgttggcggaggcacttggtttgagatggtgtctctcagttgcaaaatatttgtgtttaaa |
436 |
Q |
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| |||| || ||||||||||||||||| ||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||| ||||| | ||||| |
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| T |
31438713 |
ttactgcgtgtaaaagagaagaagtggagttgagtcctatgttgacagaggcacttggtttgaggtggtgtctctcagttgcaaaagatttgcgattaaa |
31438812 |
T |
|
| Q |
437 |
caaggtggtggtggagtccaatgcagctgctgttgtggattgtatcaatgtcaaggccataatggctgtatttgatccaattatccaagattgctgtt |
534 |
Q |
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||||||||||||||||| |||| ||| ||||||||||||||||||||| |||||| |||||||||| | |||||||||||||||||||||| |||| |
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| T |
31438813 |
taaggtggtggtggagtctgatgctgctactgttgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaagattgttgtt |
31438910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 340 - 531
Target Start/End: Original strand, 31196890 - 31197081
Alignment:
| Q |
340 |
ctgcttgcaaaagagaagaagtggatttgagtcctatgttggcggaggcacttggtttgagatggtgtctctcagttgcaaaatatttgtgtttaaacaa |
439 |
Q |
| |
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|||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||| | ||| ||||||||| |
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| T |
31196890 |
ctgcgtgcaaaagagaagaagtggagttgagtcttatgttggcaaaggcacttggtttgagatggtgtctcttagttgcaaaagacttgcctttaaacaa |
31196989 |
T |
|
| Q |
440 |
ggtggtggtggagtccaatgcagctgctgttgtggattgtatcaatgtcaaggccataatggctgtatttgatccaattatccaagattgct |
531 |
Q |
| |
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|||||||||||||||| ||| ||| ||||||||||||||||||||| |||||| |||||||||| | |||||||||||||||||||||||| |
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| T |
31196990 |
ggtggtggtggagtccgatgatgctactgttgtggattgtatcaatggcaaggctataatggctgcaattgatccaattatccaagattgct |
31197081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 138 - 325
Target Start/End: Original strand, 31193465 - 31193653
Alignment:
| Q |
138 |
caacaatgctacaagactcatatgtgacttcaatgaagctaatcgcgaacctgtccctcaaacagaaccaatcccaactgtagcgaactgatttcctcct |
237 |
Q |
| |
|
||||||| |||||| | |||| ||||||||| ||||||| |||||| |||||| |||||| | ||||| ||| || |||||||| ||||||||| |
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| T |
31193465 |
caacaattctacaaaattcatttgtgacttcgatgaagccaatcgcagacctgtgcctcaatatgttccaattccaggtgccgcgaactggtttcctcct |
31193564 |
T |
|
| Q |
238 |
caagataactgggcaaaactgaatgtagatgcaggttgctttaatgatggcttt-gcggttggtgactagttataagagatcacacggg |
325 |
Q |
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||| |||||||| ||||| ||||||||||||||||||| ||||||||||| ||| ||||||| ||||||| ||||||||||| ||||| |
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| T |
31193565 |
caaaataactggacaaaattgaatgtagatgcaggttgttttaatgatggatttaccggttggggactagtcataagagatcatacggg |
31193653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 531 - 588
Target Start/End: Original strand, 31438969 - 31439026
Alignment:
| Q |
531 |
tgttgctcatgagttagttcaaatgtccaacgtagttggctctaaaaattgggtgggg |
588 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31438969 |
tgttgctcatgagttagttcaaatgtccaaagtagttggctctaaaaattgggtgggg |
31439026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 541 - 586
Target Start/End: Original strand, 31197150 - 31197195
Alignment:
| Q |
541 |
gagttagttcaaatgtccaacgtagttggctctaaaaattgggtgg |
586 |
Q |
| |
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||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
31197150 |
gagttagttcaaatgtccacagtagttggctctaaaaattgggtgg |
31197195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 531 - 588
Target Start/End: Original strand, 28767855 - 28767912
Alignment:
| Q |
531 |
tgttgctcatgagttagttcaaatgtccaacgtagttggctctaaaaattgggtgggg |
588 |
Q |
| |
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||||||| ||||||||||||||||| |||| |||||||| | ||||||||||||||| |
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|
| T |
28767855 |
tgttgctgatgagttagttcaaatgcccaaaatagttggcacaaaaaattgggtgggg |
28767912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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