View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1390-INSERTION-6 (Length: 567)
Name: NF1390-INSERTION-6
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390-INSERTION-6 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr3 (7 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 8 - 567
Target Start/End: Original strand, 2319528 - 2320086
Alignment:
| Q |
8 |
tctccaacattattgttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaatcgatcttctcctct |
107 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2319528 |
tctccaacattatagttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaatcgatcttctcctct |
2319627 |
T |
|
| Q |
108 |
tgtgaaattaatctaacattgcagctgcttctatgtggaacacactgccatacacaaactcaattataagaaaaattggaatctgcaattttcatgaaga |
207 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2319628 |
tgtgaaatcaatttaacattgcagctgcttctatgtggaacacactgccatacacaaactcaattataagaaaaattggaatctgcaattttcatgaaga |
2319727 |
T |
|
| Q |
208 |
aaataaaaatcaaagtctacaagcatctagccatccataatttgattgaaaaacaaagagtatttgaagctttgtgagggactgtgttccattacaattc |
307 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2319728 |
aaataaaaattgaagtctacaagcatctagccacccacaatttgattgaaaaacaaagagtacttgaagctttgtgagg-actgtgttccattacaattc |
2319826 |
T |
|
| Q |
308 |
tctaaatttcaccataaaccaaaacaaaaacttaattttaattattacttgtttcgattgatatgatgggtaaatctgcaattttattacttgtgagtag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||| |
|
|
| T |
2319827 |
tctaaatttcaccataaaccaaaacaaaaacttaattttaattattacttgtttcgattgatatgatgtgtaaatctgcgattttattacctgtgagtag |
2319926 |
T |
|
| Q |
408 |
atttggtgaagaagaaagttggatgtttttgtgagaggtgtgattttgaattgcagtggaagagaaatgaaggtaagtcatgctttggttcacacactta |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2319927 |
atttggtgaagaagaaagttggatgtttttgtgagaggtgtgattttgaattgctgcggaagagaaatgaaggtaagtcatgctttgtttcacacactta |
2320026 |
T |
|
| Q |
508 |
aagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatgga |
567 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2320027 |
aagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatgga |
2320086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 77 - 567
Target Start/End: Original strand, 16989980 - 16990470
Alignment:
| Q |
77 |
aaactaaaatagtgaatcgatcttctcctcttgtgaaattaatctaacattgcagctgcttctatgtggaacacactgccatacacaaactcaattataa |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16989980 |
aaactaaaatagtgaatcgatcttctcctcttgtgaaatcaatttaacattgcagctgcttctatgtggaacacactgccatacacaaactcaattataa |
16990079 |
T |
|
| Q |
177 |
gaaaaattggaatctgcaattttcatgaagaaaataaaaatcaaagtctacaagcatctagccatccataatttgattgaaaaacaaagagtatttgaag |
276 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16990080 |
gaaaaattggaatctgaaaatttcatgaagaaaataaaaattgaagtctacaagcatctagccacccacaatttgattgaaaaacaaagagtatttgaag |
16990179 |
T |
|
| Q |
277 |
ctttgtgagggactgtgttccattacaattctctaaatttcaccataaaccaaaacaaaaacttaattttaattattacttgtttcgattgatatgatgg |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16990180 |
ctttgtgagggactgtgttccattacaattctctaaatttcaccataaaccaaaacaaaaacttaattttaattattacttgtttcgattgatatgatgg |
16990279 |
T |
|
| Q |
377 |
gtaaatctgcaattttattacttgtgagtagatttggtgaagaagaaagttggatgtttttgtgagaggtgtgattttgaattgcagtggaagagaaatg |
476 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16990280 |
gtaaatctgcaattttattacttgtgaatagatttggtgaagaagaaagttggatgtttttgtgagaggtgtgattttggattgcagtggaagagaaatg |
16990379 |
T |
|
| Q |
477 |
aaggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatgga |
567 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16990380 |
aaggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggagatgga |
16990470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 16989497 - 16989582
Alignment:
| Q |
8 |
tctccaacattattgttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
93 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16989497 |
tctccaacattatagttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
16989582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 359 - 567
Target Start/End: Complemental strand, 37242338 - 37242130
Alignment:
| Q |
359 |
tttcgattgatatgatgggtaaatctgcaattttattacttgtgagtagatttggtgaagaagaaagttggatgtttttgtgagaggtgtgattttgaat |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37242338 |
tttcgattgatatgatgggtaaatctgcaattttattacttgtgagtagatttggtgaagaagaaagttggatgtttttgtgagaggtgtgattttgaat |
37242239 |
T |
|
| Q |
459 |
tgcagtggaagagaaatgaaggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtg |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37242238 |
tgcagtggaagagaaatgaaggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtg |
37242139 |
T |
|
| Q |
559 |
ggagatgga |
567 |
Q |
| |
|
||||||||| |
|
|
| T |
37242138 |
ggagatgga |
37242130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 359 - 567
Target Start/End: Complemental strand, 1259050 - 1258842
Alignment:
| Q |
359 |
tttcgattgatatgatgggtaaatctgcaattttattacttgtgagtagatttggtgaagaagaaagttggatgtttttgtgagaggtgtgattttgaat |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1259050 |
tttcgattgatatgatgggtaaatctgcaattttattacttgtgagtagatttggtgaagaaaaaagttggatgtttttgtgagaggtgtgattttgaat |
1258951 |
T |
|
| Q |
459 |
tgcagtggaagagaaatgaaggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtg |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1258950 |
tgcagtggaagagaaatgaaggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtg |
1258851 |
T |
|
| Q |
559 |
ggagatgga |
567 |
Q |
| |
|
||||||||| |
|
|
| T |
1258850 |
ggagatgga |
1258842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 363 - 567
Target Start/End: Original strand, 34873367 - 34873570
Alignment:
| Q |
363 |
gattgatatgatgggtaaatctgcaattttattacttgtgagtagatttggtgaagaagaaagttggatgtttttgtgagaggtgtgattttgaattgca |
462 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34873367 |
gattgatatgatgggtaaatctgcaattttattacttgtgagtagatttggtgaagaagaaagttggatgtttttgtgagaggtgtgattttgaattgca |
34873466 |
T |
|
| Q |
463 |
gtggaagagaaatgaaggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggag |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34873467 |
gtggaagagaaatgaaggtaagtcatgctttggttcacccacttaaa-aggtttcaattattggtggtgtttctttgaaggtggttgctggttgtgggag |
34873565 |
T |
|
| Q |
563 |
atgga |
567 |
Q |
| |
|
||||| |
|
|
| T |
34873566 |
atgga |
34873570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 1259487 - 1259402
Alignment:
| Q |
8 |
tctccaacattattgttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
93 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1259487 |
tctccaacattatagttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
1259402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 37242775 - 37242690
Alignment:
| Q |
8 |
tctccaacattattgttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
93 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37242775 |
tctccaacattatagttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
37242690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 249 - 331
Target Start/End: Original strand, 54712861 - 54712943
Alignment:
| Q |
249 |
ttgattgaaaaacaaagagtatttgaagctttgtgagggactgtgttccattacaattctctaaatttcaccataaaccaaaa |
331 |
Q |
| |
|
|||||||||||| ||||| ||||||| ||||| ||||||| |||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
54712861 |
ttgattgaaaaataaagaatatttgaggctttatgagggattgtgcttcattacaattctctaaatttcaccataaaccaaaa |
54712943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 34873232 - 34873273
Alignment:
| Q |
8 |
tctccaacattattgttttttaattaatttttcatatgattt |
49 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
34873232 |
tctccaacattatagttttttaattaatttttcatataattt |
34873273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 359 - 567
Target Start/End: Complemental strand, 31234501 - 31234293
Alignment:
| Q |
359 |
tttcgattgatatgatgggtaaatctgcaattttattacttgtgagtagatttggtgaagaagaaagttggatgtttttgtgagaggtgtgattttgaat |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31234501 |
tttcgattgatatgatgggtaaatctgcaattttattacttgtgagtagatttggtgaagaagaaagttggatgtttttgtgagaggtgtgattttgaat |
31234402 |
T |
|
| Q |
459 |
tgcagtggaagagaaatgaaggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtg |
558 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31234401 |
tgtagtggaagagaaatgaaggtaagtcatgctttggttcacacacttaaagaggtttcaattattggtggtgtttctttgaaggtggttgctggttgtg |
31234302 |
T |
|
| Q |
559 |
ggagatgga |
567 |
Q |
| |
|
||||||||| |
|
|
| T |
31234301 |
ggagatgga |
31234293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 31234939 - 31234854
Alignment:
| Q |
8 |
tctccaacattattgttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
93 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31234939 |
tctccaacattatagttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
31234854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 18246740 - 18246655
Alignment:
| Q |
8 |
tctccaacattattgttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
93 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18246740 |
tctccaacattatagttttttaattaatttttcatatgatttaactatggtttgaaaattagagtaaacaaactaaaatagtgaat |
18246655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 171 - 337
Target Start/End: Original strand, 41664576 - 41664735
Alignment:
| Q |
171 |
ttataagaaaaattggaatctgcaattttcatgaagaaaataaaaatcaaagtctacaagcatctagccatccataatttgattgaaaaacaaagagtat |
270 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| || |||| ||||| ||||||| ||| || ||| |||| ||||||||||||| ||||| || |
|
|
| T |
41664576 |
ttataagaaaaattggaatatgcagttttcataaa------aaaattcaaa-tctacaatcatttaaccacgcatagtttgattgaaaaataaagaaaat |
41664668 |
T |
|
| Q |
271 |
ttgaagctttgtgagggactgtgttccattacaattctctaaatttcaccataaaccaaaacaaaaa |
337 |
Q |
| |
|
|||| ||||| |||||| |||| | ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41664669 |
ttgaggctttaagagggattgtgcttcattacaattctctaaatttcaccataaaccaaaaaaaaaa |
41664735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 171 - 337
Target Start/End: Complemental strand, 32972384 - 32972224
Alignment:
| Q |
171 |
ttataagaaaaattggaatctgcaattttcatgaagaaaataaaaatcaaagtctacaagcatctagccatccataatttgattgaaaaacaaagagtat |
270 |
Q |
| |
|
||||||||||||||| |||||||| ||||||| || |||| ||||| ||||||| ||| || ||| |||| ||||||||||||| ||| | || |
|
|
| T |
32972384 |
ttataagaaaaattgaaatctgcagttttcataaa------aaaattcaaa-tctacaatcatttaaccacgcatagtttgattgaaaaataaataaaat |
32972292 |
T |
|
| Q |
271 |
ttgaagctttg-tgagggactgtgttccattacaattctctaaatttcaccataaaccaaaacaaaaa |
337 |
Q |
| |
|
|||| ||||| ||||||| |||| | ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
32972291 |
ttgaggcttttatgagggattgtgcttcattacaattctctaaatttcaccataaaccaaaaaaaaaa |
32972224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 32972451 - 32972406
Alignment:
| Q |
125 |
attgcagctgcttctatgtggaacacactgccatacacaaactcaa |
170 |
Q |
| |
|
||||||| |||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
32972451 |
attgcagttgcttctatggggaacacactgacatacacaaactcaa |
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