View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390-INSERTION-7 (Length: 822)
Name: NF1390-INSERTION-7
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390-INSERTION-7 |
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Alignment Details
Target: chr1 (Bit Score: 680; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 8 - 771
Target Start/End: Complemental strand, 3308385 - 3307623
Alignment:
| Q |
8 |
caatatttacccatcaaccacttgttgctctcttgagtgctcgaattactcttcagcaaaactgatcaagtccaagaaattcttgaaccctgttataggc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3308385 |
caatatttacccatcaaccacttgttgctctcttgagtgccgaaattactcttcagcaaaactgatcaagtccgagaaattcttgaaccctgttataggc |
3308286 |
T |
|
| Q |
108 |
atcgacctccacttccatccaactaccctttgatccttaggtagtcctacaagttttcaagtttgattcttctccataaattcttttcctcattcacttt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3308285 |
atcgacctccacttccatccaactaccctttgatccttaggtagtcccacaagttttcaagtttgattcttctccatgaattcttttcctcattcacttt |
3308186 |
T |
|
| Q |
208 |
cttcttccgtgaactcctttcctcattcatttcatattgccatttctaattatccttgttctcgactgcttccttaaagatattcgattcctacttgcat |
307 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308185 |
cttcttccgtgaactcttttcctcattcatttcatattgccatttctaattatcattgttctcgactgcttccttaaagatattcgattcctacttgcat |
3308086 |
T |
|
| Q |
308 |
attttcaaccacacttagatcataacacacaaggtctttatagccataccactttggtgcaataattttcccattttctccatgatctcttgccaactga |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3308085 |
attttcaaccacacttagatcataacacacaaggtctttatagccataccactttggtgcaataattttcccattttctcc---atctcttgccaactga |
3307989 |
T |
|
| Q |
408 |
tagtcatgagccacagttggttgtcttactatggaacttgctggaggaatactatcctcatttccatacctggtcttactagtgggaaactcatcctcaa |
507 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3307988 |
tagtcatgagccactgttggttgtcttactatagaacttgctggaggaatactatcctcatttccatacctggtcttactagtgggaaactcatcctcaa |
3307889 |
T |
|
| Q |
508 |
acacatacaagtctttgtacttcatcctcatacaagtctcatcaaaagtaacatcattgctcatcatgacccttaagcctccaggttccatactcaattg |
607 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3307888 |
acacatacaagtctttgtacttcatcctcatacaagtctcatcaaaagtaacatcattgctcatcatgacccttaagcctccaggttccatactcaattc |
3307789 |
T |
|
| Q |
608 |
aataacttgtaacccttatgccttcaggataaccaatgaagacacaatcaagagctctaacttcaaacctccaca-gtgtcttgaaatttattcatattg |
706 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
3307788 |
aataacttgtaacccttatgccttctggataaccaatgaagacacaatcgagagctctaacttcaaacctccataggtgtcttgaaatttattcatattg |
3307689 |
T |
|
| Q |
707 |
acggacatatcttgatcatgttgtagtactcacagcttctcttct-aaaactcttgggcaacccag |
771 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
3307688 |
acggacatatcttgatcatgttgtagtactcacagcttctcttctaaaaactcttgggcaacccag |
3307623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 4386426 - 4386380
Alignment:
| Q |
50 |
gaattactcttcagcaaaactgatcaagtccaagaaattcttgaacc |
96 |
Q |
| |
|
||||||||||||| ||||| ||| |||||||||| |||||||||||| |
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| T |
4386426 |
gaattactcttcaacaaaattgaccaagtccaagcaattcttgaacc |
4386380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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