View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390-INSERTION-8 (Length: 759)
Name: NF1390-INSERTION-8
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390-INSERTION-8 |
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Alignment Details
Target: chr7 (Bit Score: 457; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 8 - 577
Target Start/End: Complemental strand, 35108518 - 35107975
Alignment:
| Q |
8 |
ttttcttccattcttttggattaaatcaaaatcagaaaaatacataaagtcaaggccagatgactcaattgctgctctttatctttctcttgagaatgga |
107 |
Q |
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| T |
35108518 |
ttttcttccattcttttggattaaatcaaaatcagaaaaatacataaagtcaaggccagatgactcaattgctgctctttatctttctcttgagaatgga |
35108419 |
T |
|
| Q |
108 |
aaattttggttccctgctcaagtttataaccgtgaggtaattattggttgcatgcagattttagtagtaattattttcataattaatccctgatttaaaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35108418 |
aaattttggttccctgctcaagtttataaccgtgaggtaattattggttgcatgcagattttagtagtaattattttcataattaatccctgatttaaaa |
35108319 |
T |
|
| Q |
208 |
attagtactaattaacattctgtcttgtaattaagggattttgttacttaattttttgacattttaattacattttcagaatggtcatgctggattcctg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35108318 |
attagtactaattaacattctgtcttgtaattaagggattttgttacttaattttttgacattttaattacattttcagaatggtcatgctggattcctg |
35108219 |
T |
|
| Q |
308 |
ctctcatgttatgatgctgaactttgctatgactctagaacagatacctttcaagcaaggtttgtacaacagttgactccttcaatattgttaagtttag |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||| |
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| T |
35108218 |
ctctcatgttatgatgctgaactttgctatgactctagaacagatacctttcaagcaaggtatgtgcaacagttgactccttcaatattgttgagtttag |
35108119 |
T |
|
| Q |
408 |
gtgccaaccaacttgtctttttaactgtcctattgtccttttggtttaattctgaaccggacacgacattgtaactaacatgtaaacactaataataatt |
507 |
Q |
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| T |
35108118 |
gtgccaaccaacttgtctttttaactg--------tccttttggtttaattctgaaccggaca------tgt------------aacactaataataatt |
35108045 |
T |
|
| Q |
508 |
taagaaaatgaaaataattgaatgaaccccttgtgttagtgacatgtgccggtgtcagacaccgaaatgc |
577 |
Q |
| |
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| T |
35108044 |
taagaaaatgaaaataattgaatgaaccccttgtgttagtggcatgtgccggtgtcagacactgaaatgc |
35107975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 623 - 759
Target Start/End: Complemental strand, 35107932 - 35107796
Alignment:
| Q |
623 |
ttaaaggtagataaggtcattaaactctaaacatgaagttcatgttttctctgacaggtactcacctcatgggagatggacgactgaggaaaacatgaaa |
722 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
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| T |
35107932 |
ttaaaggtagataaggtcattaaactctaaatatgaagttcatgttttctctgacaggtactcacctcatgggagatggacaactgaggaaaacataaaa |
35107833 |
T |
|
| Q |
723 |
tgggaatggctaagagtgccacctattgactcttctt |
759 |
Q |
| |
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|||||| |||||||||| ||||||||||||||||||| |
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| T |
35107832 |
tgggaaaggctaagagtaccacctattgactcttctt |
35107796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 484 - 531
Target Start/End: Complemental strand, 30585168 - 30585121
Alignment:
| Q |
484 |
aacatgtaaacactaataataatttaagaaaatgaaaataattgaatg |
531 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| | |||||||| |
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| T |
30585168 |
aacatgtagacactaataataatttaagaaaatgaaagtgattgaatg |
30585121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 485 - 531
Target Start/End: Original strand, 16330974 - 16331020
Alignment:
| Q |
485 |
acatgtaaacactaataataatttaagaaaatgaaaataattgaatg |
531 |
Q |
| |
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||||||| |||||| ||||||||||||||||||||||| ||| |||| |
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| T |
16330974 |
acatgtagacactagtaataatttaagaaaatgaaaatgattaaatg |
16331020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 147
Target Start/End: Complemental strand, 38728718 - 38728658
Alignment:
| Q |
87 |
tatctttctcttgagaatggaaaattttggttccctgctcaagtttataaccgtgaggtaa |
147 |
Q |
| |
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|||||| ||||||||| ||| || |||| || |||||||||||||||||||||||||||| |
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| T |
38728718 |
tatcttgctcttgagactggcaatttttcctttcctgctcaagtttataaccgtgaggtaa |
38728658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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