View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390-Insertion-13 (Length: 260)

Name: NF1390-Insertion-13
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390-Insertion-13
NF1390-Insertion-13
[»] chr8 (9 HSPs)
chr8 (30-260)||(15695101-15695331)
chr8 (30-141)||(18342949-18343060)
chr8 (30-141)||(18346992-18347103)
chr8 (30-141)||(2409425-2409536)
chr8 (30-141)||(4751371-4751482)
chr8 (30-141)||(2404186-2404297)
chr8 (30-141)||(4746346-4746457)
chr8 (30-125)||(36959023-36959119)
chr8 (30-123)||(36962795-36962889)
[»] chr2 (3 HSPs)
chr2 (30-141)||(901543-901654)
chr2 (30-141)||(29884805-29884916)
chr2 (30-141)||(29889810-29889921)
[»] chr7 (2 HSPs)
chr7 (30-141)||(34042194-34042305)
chr7 (30-141)||(34047200-34047311)
[»] chr4 (3 HSPs)
chr4 (30-141)||(39544949-39545060)
chr4 (30-141)||(39571430-39571541)
chr4 (47-141)||(9406108-9406202)
[»] chr3 (2 HSPs)
chr3 (30-141)||(34531146-34531257)
chr3 (30-141)||(36394284-36394395)
[»] chr1 (2 HSPs)
chr1 (30-141)||(52891091-52891202)
chr1 (30-97)||(26415353-26415420)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 30 - 260
Target Start/End: Complemental strand, 15695331 - 15695101
Alignment:
Q  30 aatcatatgagagattagaggaataattctttcatattttatttctacagtccaagactgtttatatagaaaaaggaattacagtaaacataatgataaa 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  15695331 aatcatatgagagattagaggaataattctttcatattttatttctacagtccaagactgtttatatagaaaaaggaattacagtaaacataatgacaaa 15695232  T
Q  130 taatgtcttatcttgattcatgaccaataatatcctttgacttttctaaaatatctatcaatacaaacacatgaagagtggacttggtaaacataaattc 229  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15695231 taatttcttatcttgattcatgaccaataatatcctttgacttttctaaaatatctatcaatacaaacacatgaagagtggacttggtaaacataaattc 15695132  T
Q  230 atgactcaaattttctatcattacagcatca 260  Q
    |||||||||||||||||||||||||||||||    
T  15695131 atgactcaaattttctatcattacagcatca 15695101  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 18342949 - 18343060
Alignment:
Q  30 aatcatatgagagattagaggaataattctttcatattttatttctacagtccaagactgtttatatagaaaaaggaattacagtaaacataatgataaa 129  Q
    |||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  18342949 aatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaattacaataaacataatgataaa 18343048  T
Q  130 taatgtcttatc 141  Q
    ||||||||||||    
T  18343049 taatgtcttatc 18343060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 18346992 - 18347103
Alignment:
Q  30 aatcatatgagagattagaggaataattctttcatattttatttctacagtccaagactgtttatatagaaaaaggaattacagtaaacataatgataaa 129  Q
    |||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| |||    
T  18346992 aatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaattacaataaacataatgacaaa 18347091  T
Q  130 taatgtcttatc 141  Q
    ||||||||||||    
T  18347092 taatgtcttatc 18347103  T

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Target: chr8; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 2409425 - 2409536
Alignment:
Q  30 aatcatatgagagattagaggaataattctttcatattttatttctacagtccaagactgtttatatagaaaaaggaattacagtaaacataatgataaa 129  Q
    |||||||| ||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| |||    
T  2409425 aatcatataagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaattacaataaacataatgacaaa 2409524  T
Q  130 taatgtcttatc 141  Q
    ||||||||||||    
T  2409525 taatgtcttatc 2409536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 4751371 - 4751482
Alignment:
Q  30 aatcatatgagagattagaggaataattctttcatattttatttctacagtccaagactgtttatatagaaaaaggaattacagtaaacataatgataaa 129  Q
    |||||||| ||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| |||    
T  4751371 aatcatataagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaattacaataaacataatgacaaa 4751470  T
Q  130 taatgtcttatc 141  Q
    ||||||||||||    
T  4751471 taatgtcttatc 4751482  T

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Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 2404186 - 2404297
Alignment:
Q  30 aatcatatgagagattagaggaataattctttcatattttatttctacagtccaagactgtttatatagaaaaaggaattacagtaaacataatgataaa 129  Q
    |||||||| ||||||||||||||| |||||||| |||||||||| | ||||||||||||||||||||| |||||||||||||| |||||||||||| |||    
T  2404186 aatcatataagagattagaggaatgattctttcttattttatttatgcagtccaagactgtttatatataaaaaggaattacaataaacataatgacaaa 2404285  T
Q  130 taatgtcttatc 141  Q
    ||||||||||||    
T  2404286 taatgtcttatc 2404297  T

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Target: chr8; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 4746346 - 4746457
Alignment:
Q  30 aatcatatgagagattagaggaataattctttcatattttatttctacagtccaagactgtttatatagaaaaaggaattacagtaaacataatgataaa 129  Q
    |||||||| ||||||||||||||| |||||||| |||||||||||| |||||||||| |||||||||| |||||||||||||| |||||||||||| |||    
T  4746346 aatcatataagagattagaggaatgattctttcttattttatttctgcagtccaagattgtttatatataaaaaggaattacaataaacataatgacaaa 4746445  T
Q  130 taatgtcttatc 141  Q
    ||||||||||||    
T  4746446 taatgtcttatc 4746457  T

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Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 36959023 - 36959119
Alignment:
Q  30 aatcatatgagagattagaggaataattctttcatattttatttctacagtccaagactgtttatata-gaaaaaggaattacagtaaacataatga 125  Q
    |||||||| |||||| |||||||| |||||||| |||||||||||| |||||||||||||||||||||  |||||||||||||| ||||||||||||    
T  36959023 aatcatataagagatcagaggaatgattctttcttattttatttctgcagtccaagactgtttatatattaaaaaggaattacaataaacataatga 36959119  T

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Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 30 - 123
Target Start/End: Original strand, 36962795 - 36962889
Alignment:
Q  30 aatcatatgagagattagaggaataattctttcatattttatttctacagtccaagactgtttatata-gaaaaaggaattacagtaaacataat 123  Q
    |||||||| ||||||||||| ||| |||||||| |||||||||| | | |||||||||||||||||||  |||||||||||||| ||||||||||    
T  36962795 aatcatataagagattagagaaatgattctttcttattttatttatgcggtccaagactgtttatatattaaaaaggaattacaataaacataat 36962889  T

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Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 901654 - 901543
Alignment:
Q  30 aatcatatgagagattagaggaataattctttcatattttatttctacagtccaagactgtttatatagaaaaaggaattacagtaaacataatgataaa 129  Q
    |||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| |||    
T  901654 aatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaattacaataaacataatgacaaa 901555  T
Q  130 taatgtcttatc 141  Q
    ||||||||||||    
T  901554 taatgtcttatc 901543  T

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Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 29884805 - 29884916
Alignment:
Q  30 aatcatatgagagattagaggaataattctttcatattttatttctacagtccaagactgtttatatagaaaaaggaattacagtaaacataatgataaa 129  Q
    |||||||| ||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| |||    
T  29884805 aatcatataagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaattacaataaacataatgacaaa 29884904  T
Q  130 taatgtcttatc 141  Q
    ||||||||||||    
T  29884905 taatgtcttatc 29884916  T

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Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 29889810 - 29889921
Alignment:
Q  30 aatcatatgagagattagaggaataattctttcatattttatttctacagtccaagactgtttatatagaaaaaggaattacagtaaacataatgataaa 129  Q
    |||||||| ||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| |||    
T  29889810 aatcatataagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatatataaaaaggaattacaataaacataatgacaaa 29889909  T
Q  130 taatgtcttatc 141  Q
    ||||||||||||    
T  29889910 taatgtcttatc 29889921  T

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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 34042305 - 34042194
Alignment:
Q  30 aatcatatgagagattagaggaataattctttcatattttatttctacagtccaagactgtttatatagaaaaaggaattacagtaaacataatgataaa 129  Q
    |||||||| |||| |||||||||| |||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| |||    
T  34042305 aatcatataagagtttagaggaatgattctttcttattttatttcttcagtccaagactgtttatatataaaaaggaattacaataaacataatgacaaa 34042206  T
Q  130 taatgtcttatc 141  Q
    ||||||||||||    
T  34042205 taatgtcttatc 34042194  T

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Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 34047311 - 34047200
Alignment:
Q  30 aatcatatgagagattagaggaataattctttcatattttatttctacagtccaagactgtttatatagaaaaaggaattacagtaaacataatgataaa 129  Q
    |||||||| |||| |||||||||| |||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| |||    
T  34047311 aatcatataagagtttagaggaatgattctttcttattttatttcttcagtccaagactgtttatatataaaaaggaattacaataaacataatgacaaa 34047212  T
Q  130 taatgtcttatc 141  Q
    ||||||||||||    
T  34047211 taatgtcttatc 34047200  T

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Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 39545060 - 39544949
Alignment:
Q  30 aatcatatgagagattagaggaataattctttcatattttatttctacagtccaagactgtttatatagaaaaaggaattacagtaaacataatgataaa 129  Q
    |||||||| ||||||||||||||| |||||||| |||||||||| | ||||||||||||||||||||| |||||||||||||| |||||||||||| |||    
T  39545060 aatcatataagagattagaggaatgattctttcttattttatttatgcagtccaagactgtttatatataaaaaggaattacaataaacataatgacaaa 39544961  T
Q  130 taatgtcttatc 141  Q
    ||||||||||||    
T  39544960 taatgtcttatc 39544949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 39571541 - 39571430
Alignment:
Q  30 aatcatatgagagattagaggaataattctttcatattttatttctacagtccaagactgtttatatagaaaaaggaattacagtaaacataatgataaa 129  Q
    |||||||| ||||||||||||||| |||||||| |||||||||| | ||||||||||||||||||||| |||||||||||||| |||||||||||| |||    
T  39571541 aatcatataagagattagaggaatgattctttcttattttatttatgcagtccaagactgtttatatataaaaaggaattacaataaacataatgacaaa 39571442  T
Q  130 taatgtcttatc 141  Q
    ||||||||||||    
T  39571441 taatgtcttatc 39571430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 9406108 - 9406202
Alignment:
Q  47 gaggaataattctttcatattttatttctacagtccaagactgtttatatagaaaaaggaattacagtaaacataatgataaataatgtcttatc 141  Q
    ||||||| | |||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||    
T  9406108 gaggaatgactctttcttattttatttctacagtccaagactgtttatatataaaaaggaattacaataaacataatgacaaataatgtcttatc 9406202  T

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Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 34531146 - 34531257
Alignment:
Q  30 aatcatatgagagattagaggaataattctttcatattttatttctacagtccaagactgtttatatagaaaaaggaattacagtaaacataatgataaa 129  Q
    ||||||||||||||||||| |||| |||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||| |||    
T  34531146 aatcatatgagagattagaagaatgattctttcttattttatttctgcagtccaagactgtttatataggaaaaggaattacaataaacataatgacaaa 34531245  T
Q  130 taatgtcttatc 141  Q
    |||||| |||||    
T  34531246 taatgttttatc 34531257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 36394395 - 36394284
Alignment:
Q  30 aatcatatgagagattagaggaataattctttcatattttatttctacagtccaagactgtttatatagaaaaaggaattacagtaaacataatgataaa 129  Q
    |||||||||  ||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||| ||||||||||||| |||||||||||| |||    
T  36394395 aatcatatgcaagattagaggaataattttttcatattttatttttacagtccaagactgtttttataggaaaaggaattacaataaacataatgacaaa 36394296  T
Q  130 taatgtcttatc 141  Q
    ||||||||||||    
T  36394295 taatgtcttatc 36394284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 52891202 - 52891091
Alignment:
Q  30 aatcatatgagagattagaggaataattctttcatattttatttctacagtccaagactgtttatatagaaaaaggaattacagtaaacataatgataaa 129  Q
    |||||||| |||| |||||||||| |||||||  | |||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| |||    
T  52891202 aatcatataagagtttagaggaatgattctttttttttttatttctgcagtccaagactgtttatatataaaaaggaattacaataaacataatgacaaa 52891103  T
Q  130 taatgtcttatc 141  Q
    ||||||||||||    
T  52891102 taatgtcttatc 52891091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 26415353 - 26415420
Alignment:
Q  30 aatcatatgagagattagaggaataattctttcatattttatttctacagtccaagactgtttatata 97  Q
    |||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||    
T  26415353 aatcatatgagagattagaggaatgattctttcttattttatttctgcagtccaagactgtttatata 26415420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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