View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1390-Insertion-14 (Length: 482)
Name: NF1390-Insertion-14
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390-Insertion-14 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 111 - 482
Target Start/End: Original strand, 24776583 - 24776977
Alignment:
| Q |
111 |
gacataatttaaagttgttttcattttctattgggattggtgtgatacataacatgcccctttcacctact----------------------tttatcg |
188 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||| ||||||| |
|
|
| T |
24776583 |
gacagaatttaaagttgttttcattttctattgggattggtgtgatacgtaacatgccattttcacatacttatgccattttcacatacttgttttatcg |
24776682 |
T |
|
| Q |
189 |
taataacacttttatagaccaaatnnnnnnnt-tactcaaagaacaaagaaacaaaccaaccttatattgttccttaacgtctttctcagtccttccaca |
287 |
Q |
| |
|
|||||||| || |||||||||||| ||||| || ||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
24776683 |
taataacaattgtatagaccaaataaaaacaaatactcgaacaacaaaggaacaaaccaaccttatagtgctccttaacgtctttctcagtccttccaca |
24776782 |
T |
|
| Q |
288 |
tgcctcagcaagtgtcttaataacagcagctttaccaattcccatttctaaaccttgatgcggtggagcaatcctgtttgaaaatagatacacaactggt |
387 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24776783 |
tgcctcagcaagtgtcttaataacagcagctttaccaactcccatttctaaaccttgatacggtggagcaatcctgtttgaaaatagatacacaactggt |
24776882 |
T |
|
| Q |
388 |
aataaatcaccaggcgtagtatgcatcactgtcctcaaaacattacaaccaatatccgacattgcattcctccctttctcttccttgatcatgtc |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24776883 |
aataaatcaccaggcgtagtatgcatcactgtcctcaagacattacaaccaatatccgacatcgcattcctccctttctcttccttgatcatgtc |
24776977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 24776051 - 24776155
Alignment:
| Q |
8 |
ccaatatgttgtaggccgttataaccatgaaactaacgcactcttctggtatattcaattatagaacagattcgaaccaacattcataaaacaagcaagt |
107 |
Q |
| |
|
||||||| || ||||||||| ||||| |||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24776051 |
ccaatattttataggccgttttaaccgtgaaactaccgcactcttccggtataatcaattatagaacagattcgaaccaacattcataaaacaagcaagt |
24776150 |
T |
|
| Q |
108 |
acaga |
112 |
Q |
| |
|
|||| |
|
|
| T |
24776151 |
gcaga |
24776155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 9807 times since January 2019
Visitors: 7932