View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1390-Insertion-16 (Length: 466)
Name: NF1390-Insertion-16
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390-Insertion-16 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 9 - 466
Target Start/End: Original strand, 27623533 - 27623990
Alignment:
| Q |
9 |
cttgggttactataatggctagttagtaaatgtagctaaaaatttctccaatgtttaacaaaattcatattattttgtaggaaagtgaatgtttcaatgt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27623533 |
cttgggttactataatggctagttagtaaatgtagctaaaaatttctccaatgtttaacaaaattcatattattttgtaggaaagtgaatgtttcaatgt |
27623632 |
T |
|
| Q |
109 |
taagaagagaaatgctatcaatatcaaacaaagagttttcaacatcatgtataacaggaaacccaatagacgattgttggaaatgtgacacagattgggc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27623633 |
taagaagagaaatgctatcaatatcaaacaaagagttttcaacatcatgtataacaggaaacccaatagacgattgttggaaatgtgacacagattgggc |
27623732 |
T |
|
| Q |
209 |
caacaatcgtcaaaggttagcagattatgcaatagggtttggacaaaatgccaaaggaggaaaaggtggcaaattttacattgtcacagattcctcagac |
308 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27623733 |
caacaatcgtcaaaggttagcagattgtgcaatagggtttggacaaaatgccaaaggaggaaaaggtggcaaattttacattgtcacagattcctcagac |
27623832 |
T |
|
| Q |
309 |
aatgatgctgtgaatcctaaacctggtactttaagatatgcagttatacaaaatgaaccactttggattgtgtttccaagtaacatgatgattaagttgt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27623833 |
aatgatgctgtgaatcctaaacctggtactttaagatatgcagttatacaaaatgaaccactttggattgtgtttccaagtaacatgatgattaagttgt |
27623932 |
T |
|
| Q |
409 |
ctcaagagcttatttttaatagcttcaaaaccattgatggtcgtggtgctgatgttca |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27623933 |
ctcaagagcttatttttaatagcttcaaaaccattgatggtcgtggtgctgatgttca |
27623990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 168 - 466
Target Start/End: Complemental strand, 41366135 - 41365837
Alignment:
| Q |
168 |
aacccaatagacgattgttggaaatgtgacacagattgggccaacaatcgtcaaaggttagcagattatgcaatagggtttggacaaaatgccaaaggag |
267 |
Q |
| |
|
||||| || ||||||||||||||||| || |||| ||| |||||||||||||||||||||| |||| |||||| |||||||| || |||| ||||||| |
|
|
| T |
41366135 |
aacccgattgacgattgttggaaatgcgatccagaatggcccaacaatcgtcaaaggttagctgattgtgcaatcgggtttggtcagtatgctaaaggag |
41366036 |
T |
|
| Q |
268 |
gaaaaggtggcaaattttacattgtcacagattcctcagacaatgatgctgtgaatcctaaacctggtactttaagatatgcagttatacaaaatgaacc |
367 |
Q |
| |
|
|||||||||| |||||||| |||| |||||||| ||||| |||||||||| | || ||||| ||||| |||||||||| || ||| |||||||||| |
|
|
| T |
41366035 |
gaaaaggtggtgaattttacgttgtaacagattcatcagatgatgatgctgttaccccaaaaccaggtacattaagatatggtgtgataaaaaatgaacc |
41365936 |
T |
|
| Q |
368 |
actttggattgtgtttccaagtaacatgatgattaagttgtctcaagagcttatttttaatagcttcaaaaccattgatggtcgtggtgctgatgttca |
466 |
Q |
| |
|
| | ||||| ||||| || |||||||||||||||||| || ||||||||||| |||||||| | || || ||||| || ||||| ||||||||||| |
|
|
| T |
41365935 |
attgtggatagtgttccctagtaacatgatgattaagctgaagcaagagcttatatttaatagttataagactattgacggacgtggagctgatgttca |
41365837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 14720 times since January 2019
Visitors: 8422