View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390-Insertion-17 (Length: 675)

Name: NF1390-Insertion-17
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390-Insertion-17
NF1390-Insertion-17
[»] chr1 (11 HSPs)
chr1 (7-675)||(4872113-4872765)
chr1 (537-593)||(6326689-6326745)
chr1 (537-594)||(14508749-14508806)
chr1 (538-582)||(12535423-12535467)
chr1 (537-593)||(28239162-28239218)
chr1 (538-593)||(12532934-12532989)
chr1 (537-580)||(28231589-28231632)
chr1 (537-582)||(28326411-28326456)
chr1 (441-493)||(677215-677263)
chr1 (538-604)||(12540654-12540720)
chr1 (537-582)||(47569252-47569297)
[»] chr5 (1 HSPs)
chr5 (537-594)||(1717979-1718036)
[»] chr2 (2 HSPs)
chr2 (537-594)||(9066378-9066435)
chr2 (537-578)||(9068561-9068602)
[»] chr3 (1 HSPs)
chr3 (536-588)||(47924856-47924908)


Alignment Details
Target: chr1 (Bit Score: 564; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 7 - 675
Target Start/End: Original strand, 4872113 - 4872765
Alignment:
Q  7 atatccatcaacacagcactgttcttagacttgctaaacaatttgaatcgcaaaaccctaaccttcatcctgttacaccggacattaatacttggttaat 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4872113 atatccatcaacacagcactgttcttagacttgctaaacaatttgaatcgcaagaccctaaccttcatcctgttacaccggacattaatacttggttaat 4872212  T
Q  107 cttcatctcttgtcacgctaaaaacggtcacatctcttcagctttctctcttttccgcaaaatcatcaacgctggtcttcgtcccagttcttccaatatg 206  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  4872213 cctcatctcttgtcacgctaaaaacggtcacatctcttcagctttctctcttttccgcaaaatcatcaacgctggtcatcgtcccagttcttccgatatg 4872312  T
Q  207 tatgatcttttctgttgtcttttagccccaggccacatttacaaagcaatgctcttacacaattacatcttcctaaagggtggttttcggttgagctgta 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4872313 tatgatcttttctgttgtcttttagccccaggccacatttacaaagcaatgctcttacacaattacatcttcctaaagggtggttttcggttgagctgta 4872412  T
Q  307 aacttatcatcatctagtcggtagcttatgtgagataggtgaaactaaaggagccatccacttgttcagaaagatagagatggatcttaacagccttcac 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||                  ||||||||||||||||||||    
T  4872413 aacttatcatcatctagtcggtagcttatgtgagataggtgaaactaaaagagccatccact------------------tggatcttaacagccttcac 4872494  T
Q  407 gaatatgttctacaggtacataatatgcaggctgtgcaaagatagacttgtacgtacatcaagcctatgatttttattctgaaatgactgctaagaatat 506  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4872495 gaatatgttctacaggtacataatacgcaggctgtgcaaagatagacttgtacgtacatcaagcctatgatttttattctgaaatgactgctaagaatat 4872594  T
Q  507 cagctttggttctactatatatcgtaatctatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttaggcaatttgggcc 606  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4872595 cagctgtggttctactatatatcgtaatctatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcaccttctttaggcaatttgggcc 4872694  T
Q  607 agagccaccactttacatccttccctgtccaag-tttaatgttgcccttgcctctgc-tttgttactgatg 675  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  4872695 agagccaccactttacatccttccctgtccaagttttaatgttgcccttgcctctgcttttgttactgatg 4872765  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 537 - 593
Target Start/End: Complemental strand, 6326745 - 6326689
Alignment:
Q  537 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 593  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||    
T  6326745 atctaatctatggctattgcatcctcggtcaatttgaacaagcaattgccttgttta 6326689  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 537 - 594
Target Start/End: Complemental strand, 14508806 - 14508749
Alignment:
Q  537 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 594  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| ||||| |||||    
T  14508806 atctaatctatggttattgcatcgtcggtcaatttaaacaagcaattgccttgtttag 14508749  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 538 - 582
Target Start/End: Complemental strand, 12535467 - 12535423
Alignment:
Q  538 tctaatctatggctattgcatcctcggtcaatttaaacaagcaat 582  Q
    ||||||||||||||||||||||  |||||||||||||||||||||    
T  12535467 tctaatctatggctattgcatcaccggtcaatttaaacaagcaat 12535423  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 537 - 593
Target Start/End: Original strand, 28239162 - 28239218
Alignment:
Q  537 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 593  Q
    ||||| ||||||| |||||||||||||||||||||||||| ||||| | ||||||||    
T  28239162 atctagtctatggttattgcatcctcggtcaatttaaacaggcaattgacttcttta 28239218  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 538 - 593
Target Start/End: Complemental strand, 12532989 - 12532934
Alignment:
Q  538 tctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttcttta 593  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||| ||||| ||||    
T  12532989 tctaatctatggctattacatcaacggtcaatttaaacaagcaattgccttgttta 12532934  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 537 - 580
Target Start/End: Original strand, 28231589 - 28231632
Alignment:
Q  537 atctaatctatggctattgcatcctcggtcaatttaaacaagca 580  Q
    ||||||||||||| |||||||||||||||||||||||| |||||    
T  28231589 atctaatctatggttattgcatcctcggtcaatttaaagaagca 28231632  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 582
Target Start/End: Original strand, 28326411 - 28326456
Alignment:
Q  537 atctaatctatggctattgcatcctcggtcaatttaaacaagcaat 582  Q
    ||||||||| ||||||||| ||| ||||||||||||||||||||||    
T  28326411 atctaatctttggctattgtatcatcggtcaatttaaacaagcaat 28326456  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 441 - 493
Target Start/End: Original strand, 677215 - 677263
Alignment:
Q  441 tgcaaagatagacttgtacgtacatcaagcctatgatttttattctgaaatga 493  Q
    |||||||||||||||||||    |||||||||||||||| |||||||||||||    
T  677215 tgcaaagatagacttgtac----atcaagcctatgatttatattctgaaatga 677263  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 538 - 604
Target Start/End: Original strand, 12540654 - 12540720
Alignment:
Q  538 tctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttaggcaatttggg 604  Q
    |||| |||||||||||||||||   ||||||||||| |||||||| ||||| |||||  ||||||||    
T  12540654 tctagtctatggctattgcatcactggtcaatttaagcaagcaattgccttgtttagagaatttggg 12540720  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 537 - 582
Target Start/End: Original strand, 47569252 - 47569297
Alignment:
Q  537 atctaatctatggctattgcatcctcggtcaatttaaacaagcaat 582  Q
    |||||| |||||| ||||||||||| |||||||| |||||||||||    
T  47569252 atctaacctatggttattgcatcctgggtcaattcaaacaagcaat 47569297  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 537 - 594
Target Start/End: Original strand, 1717979 - 1718036
Alignment:
Q  537 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 594  Q
    ||||||||||||| ||||||||| | |||||||||||||||||||| ||||| |||||    
T  1717979 atctaatctatggttattgcatcgttggtcaatttaaacaagcaattgccttgtttag 1718036  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 594
Target Start/End: Original strand, 9066378 - 9066435
Alignment:
Q  537 atctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgccttctttag 594  Q
    ||||||||||||| ||||| ||| ||||||||||||||| |||||| ||||| |||||    
T  9066378 atctaatctatggttattgtatcgtcggtcaatttaaaccagcaattgccttgtttag 9066435  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 537 - 578
Target Start/End: Original strand, 9068561 - 9068602
Alignment:
Q  537 atctaatctatggctattgcatcctcggtcaatttaaacaag 578  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  9068561 atctaatctatggctattgcatcgttggtcaatttaaacaag 9068602  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 536 - 588
Target Start/End: Complemental strand, 47924908 - 47924856
Alignment:
Q  536 tatctaatctatggctattgcatcctcggtcaatttaaacaagcaatcgcctt 588  Q
    ||||||||| |||||||||||||| ||||| ||||||||||||| || |||||    
T  47924908 tatctaatcaatggctattgcatcatcggtgaatttaaacaagcgattgcctt 47924856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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