View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390-Insertion-18 (Length: 497)

Name: NF1390-Insertion-18
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390-Insertion-18
NF1390-Insertion-18
[»] chr1 (5 HSPs)
chr1 (8-159)||(6493286-6493438)
chr1 (162-277)||(6493886-6494001)
chr1 (333-473)||(6494000-6494130)
chr1 (261-310)||(28061825-28061874)
chr1 (261-298)||(7953497-7953534)
[»] chr2 (5 HSPs)
chr2 (245-392)||(44691581-44691728)
chr2 (177-447)||(44514835-44515105)
chr2 (183-311)||(40919603-40919730)
chr2 (31-86)||(44515642-44515697)
chr2 (420-462)||(38906849-38906891)
[»] chr5 (3 HSPs)
chr5 (162-379)||(29300151-29300368)
chr5 (168-226)||(18305824-18305882)
chr5 (261-317)||(10428993-10429049)
[»] chr8 (5 HSPs)
chr8 (261-311)||(27179872-27179922)
chr8 (169-306)||(13310267-13310404)
chr8 (177-229)||(31400794-31400846)
chr8 (176-287)||(29576479-29576589)
chr8 (168-204)||(44682821-44682857)
[»] chr4 (2 HSPs)
chr4 (169-230)||(47550150-47550211)
chr4 (31-119)||(47551272-47551360)
[»] chr3 (3 HSPs)
chr3 (161-226)||(49455196-49455261)
chr3 (261-409)||(9367507-9367655)
chr3 (348-453)||(43075135-43075240)
[»] chr6 (3 HSPs)
chr6 (54-159)||(11335783-11335888)
chr6 (348-453)||(14457830-14457935)
chr6 (340-392)||(14431795-14431847)


Alignment Details
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 6493286 - 6493438
Alignment:
Q  8 atggaactaaaagcccggg-ccgtatggttttaattttgtgttcttcaaggagttttggcatttaatgaaggatgaggtgcatattttattctatcaatt 106  Q
    ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  6493286 atggaactaaaagcctggggccgtatggttttaattttgcgttcttcaaggagttttggcatttaatgaaggatgaggtccatattttattcgatcaatt 6493385  T
Q  107 tcatgcaaacgaggtgatgcctaaaggattattgtcttatttcgtggctttaa 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6493386 tcatgcaaacgaggtgatgcctaaaggattattgtcttatttcgtggctttaa 6493438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 162 - 277
Target Start/End: Original strand, 6493886 - 6494001
Alignment:
Q  162 ttttagttggtggtggaaggttttagtggcttgatgaggaatgtggtgaggcttaatttgtttgaaggtgtgcgcttcaatggggaaggaatggttttgt 261  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6493886 tttttgttggtggcggaaggttttagtggcttgatgaggaatgtggtgaggcttaatttgtttgaaggtgtgcgcttcaatggggaaggaatggttttgt 6493985  T
Q  262 ctcatcttcaatatgc 277  Q
    ||||||||||||||||    
T  6493986 ctcatcttcaatatgc 6494001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 333 - 473
Target Start/End: Original strand, 6494000 - 6494130
Alignment:
Q  333 gctcttttaaggggttttgagatggcatccgggcttaaagttaatttctttaagagttgtcttatcggaatcaatgtatcgcgggattttatggacatgg 432  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |          ||||||||||    
T  6494000 gctcttttaaggggttttgagatggcatccaggcttaaagttaatttctttaagagttgtcttatcggaatcaatgtacc----------atggacatgg 6494089  T
Q  433 cttgcaacttcttgaattgtaatgaaaggatctattccttt 473  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  6494090 cttgcaacttcttgaattgtaatgaaaggatctattccttt 6494130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 28061874 - 28061825
Alignment:
Q  261 tctcatcttcaatatgcggatgatactatttgtatagggaaggcgacggt 310  Q
    ||||||||||||||||| ||||||||| |||||||||||| | |||||||    
T  28061874 tctcatcttcaatatgccgatgatactctttgtatagggatgccgacggt 28061825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 7953497 - 7953534
Alignment:
Q  261 tctcatcttcaatatgcggatgatactatttgtatagg 298  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  7953497 tctcatcttcaatatgcagatgatactctttgtatagg 7953534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 245 - 392
Target Start/End: Original strand, 44691581 - 44691728
Alignment:
Q  245 ggaaggaatggttttgtctcatcttcaatatgcggatgatactatttgtatagggaaggcgacggtgaacaattaatgggtgctcatggctcttttaagg 344  Q
    |||||||||||  |||||||| |||||||||||||||||||| |||||||| ||||| || |||||| | |||| ||||||| | |  ||||| ||||||    
T  44691581 ggaaggaatggaattgtctcaccttcaatatgcggatgatacgatttgtatggggaaagctacggtggaaaatttatgggtgttgaaagctctcttaagg 44691680  T
Q  345 ggttttgagatggcatccgggcttaaagttaatttctttaagagttgt 392  Q
    |||||||||||||  |||||  | | ||||||||||||||| ||||||    
T  44691681 ggttttgagatggtgtccggtttaagagttaatttctttaaaagttgt 44691728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 177 - 447
Target Start/End: Complemental strand, 44515105 - 44514835
Alignment:
Q  177 gaaggttttagtggcttgatgaggaatgtggtgaggcttaatttgtttgaaggtgtgcgcttcaatggggaaggaatggttttgtctcatcttcaatatg 276  Q
    |||||||| ||||| || ||||||||||||| |||||| ||||| ||||||||| | || ||  ||  ||| ||| ||   |||||||| ||||||  ||    
T  44515105 gaaggtttgagtgggttaatgaggaatgtggcgaggctcaatttatttgaaggttttcggtttcatacggatggattgtccttgtctcaccttcaacttg 44515006  T
Q  277 cggatgatactatttgtatagggaaggcgacggtgaacaattaatgggtgctcatggctcttttaaggggttttgagatggcatccgggcttaaagttaa 376  Q
    ||||||||||||||||| ||||||||||||||||||| ||||  | |    | | ||||||  | ||||  ||||| |||||||||||||| ||||||||    
T  44515005 cggatgatactatttgtctagggaaggcgacggtgaataatttgtagacaattaaggctctacttagggaatttgaaatggcatccgggctcaaagttaa 44514906  T
Q  377 tttctttaagagttgtcttatcggaatcaatgtatcgcgggattttatggacatggcttgcaacttcttga 447  Q
    ||| || || |||||  | || ||  | |||||| | | |||||||||||| ||||| |||||||| ||||    
T  44514905 ttttttcaaaagttgcttaattggtttaaatgtaactcaggattttatggatatggcgtgcaactttttga 44514835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 183 - 311
Target Start/End: Original strand, 40919603 - 40919730
Alignment:
Q  183 tttagtggcttgatgaggaatgtggtgaggcttaatttgtttgaaggtgtgcgcttcaatggggaaggaatggttttgtctcatcttcaatatgcggatg 282  Q
    |||||||| |||||||||||||  | ||||  |||||||||||||||| |  |||||||  ||||||| | |||  | || |||||||||||||| || |    
T  40919603 tttagtgggttgatgaggaatgcagagaggtgtaatttgtttgaaggttttggcttcaagagggaagggacggtcatttcgcatcttcaatatgccga-g 40919701  T
Q  283 atactatttgtatagggaaggcgacggtg 311  Q
    ||||| |||||||||||||||| ||||||    
T  40919702 atactctttgtatagggaaggcaacggtg 40919730  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 86
Target Start/End: Complemental strand, 44515697 - 44515642
Alignment:
Q  31 atggttttaattttgtgttcttcaaggagttttggcatttaatgaaggatgaggtg 86  Q
    |||||||||||||||  |||||||||||||||||| ||||  | ||||||||||||    
T  44515697 atggttttaattttgctttcttcaaggagttttggtatttgttaaaggatgaggtg 44515642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 420 - 462
Target Start/End: Original strand, 38906849 - 38906891
Alignment:
Q  420 tttatggacatggcttgcaacttcttgaattgtaatgaaagga 462  Q
    |||||||| ||||||||||||||||||||||||| | ||||||    
T  38906849 tttatggagatggcttgcaacttcttgaattgtagtcaaagga 38906891  T

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Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 162 - 379
Target Start/End: Original strand, 29300151 - 29300368
Alignment:
Q  162 ttttagttggtggtggaaggttttagtggcttgatgaggaatgtggtgaggcttaatttgtttgaaggtgtgcgcttcaatggggaaggaatggttttgt 261  Q
    |||| ||||||||  ||||||||||||||  | |||||||||||||| ||   |||| |||| |||||| | || ||  ||| ||| ||| ||||||| |    
T  29300151 tttttgttggtggccgaaggttttagtgggcttatgaggaatgtggttagaaataatatgttcgaaggtcttcgatttcatgaggagggattggttttat 29300250  T
Q  262 ctcatcttcaatatgcggatgatactatttgtatagggaaggcgacggtgaacaattaatgggtgctcatggctcttttaaggggttttgagatggcatc 361  Q
    | || ||||||||||||||||||||||||||||| || ||||| |||||| | ||||  |||||  | | ||| || || ||||| ||||||||||| ||    
T  29300251 cgcaccttcaatatgcggatgatactatttgtatgggaaaggctacggtggaaaatttgtgggtattaaaggcgctcttgagggggtttgagatggcttc 29300350  T
Q  362 cgggcttaaagttaattt 379  Q
    ||||||||| || |||||    
T  29300351 cgggcttaaggtgaattt 29300368  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 18305882 - 18305824
Alignment:
Q  168 ttggtggtggaaggttttagtggcttgatgaggaatgtggtgaggcttaatttgtttga 226  Q
    ||||||| ||||||||||||||| |||||||||||||||||| || | || ||||||||    
T  18305882 ttggtggcggaaggttttagtgggttgatgaggaatgtggtgcggttaaacttgtttga 18305824  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 317
Target Start/End: Original strand, 10428993 - 10429049
Alignment:
Q  261 tctcatcttcaatatgcggatgatactatttgtatagggaaggcgacggtgaacaat 317  Q
    ||||| || |||||||| ||||||||||||||||| ||||| || ||||||||||||    
T  10428993 tctcacctccaatatgccgatgatactatttgtatggggaaagcaacggtgaacaat 10429049  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 311
Target Start/End: Original strand, 27179872 - 27179922
Alignment:
Q  261 tctcatcttcaatatgcggatgatactatttgtatagggaaggcgacggtg 311  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  27179872 tctcatcttcaatatgcggatgatactatttgtctaggggaggcgacggtg 27179922  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 306
Target Start/End: Original strand, 13310267 - 13310404
Alignment:
Q  169 tggtggtggaaggttttagtggcttgatgaggaatgtggtgaggcttaatttgtttgaaggtgtgcgcttcaatggggaaggaatggttttgtctcatct 268  Q
    |||||| |||||| |||||| | ||||||||||||| ||| ||||  ||||||||||| ||| | || || || | ||  ||| ||||| | || ||| |    
T  13310267 tggtggcggaagggtttagtaggttgatgaggaatgcggttaggcggaatttgtttgagggtttccggtttaaggaggttggattggttatatcacattt 13310366  T
Q  269 tcaatatgcggatgatactatttgtatagggaaggcga 306  Q
     ||||||| ||||||||||||||| |||||||||||||    
T  13310367 acaatatgtggatgatactatttgcatagggaaggcga 13310404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 31400794 - 31400846
Alignment:
Q  177 gaaggttttagtggcttgatgaggaatgtggtgaggcttaatttgtttgaagg 229  Q
    |||||||||||||| |||||||||||||| ||| | |||||||| ||||||||    
T  31400794 gaaggttttagtgggttgatgaggaatgtagtgcgccttaatttatttgaagg 31400846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 287
Target Start/End: Complemental strand, 29576589 - 29576479
Alignment:
Q  176 ggaaggttttagtggcttgatgaggaatgtggtgaggcttaatttgtttgaaggtgtgcgcttcaatggggaaggaatggttttgtctcatcttcaatat 275  Q
    ||||||||||||||| |||||||| ||||| ||| |||| ||||| ||||||||| | |  || |   ||||||| |||||  | |||||||||||||||    
T  29576589 ggaaggttttagtgggttgatgagaaatgttgtgcggctaaatttatttgaaggt-tccattttaggagggaagggatggtgatatctcatcttcaatat 29576491  T
Q  276 gcggatgatact 287  Q
    || |||||||||    
T  29576490 gctgatgatact 29576479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 204
Target Start/End: Original strand, 44682821 - 44682857
Alignment:
Q  168 ttggtggtggaaggttttagtggcttgatgaggaatg 204  Q
    ||||||| |||||||||||||||||| ||||||||||    
T  44682821 ttggtggcggaaggttttagtggcttaatgaggaatg 44682857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 230
Target Start/End: Complemental strand, 47550211 - 47550150
Alignment:
Q  169 tggtggtggaaggttttagtggcttgatgaggaatgtggtgaggcttaatttgtttgaaggt 230  Q
    |||||| |||||| ||| |||| ||||||||||||| |||||| || |||||||||||||||    
T  47550211 tggtggcggaaggctttggtggtttgatgaggaatgcggtgagactcaatttgtttgaaggt 47550150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 119
Target Start/End: Complemental strand, 47551360 - 47551272
Alignment:
Q  31 atggttttaattttgtgttcttcaaggagttttggcatttaatgaaggatgaggtgcatattttattctatcaatttcatgcaaacgag 119  Q
    |||||||||||||||  ||| |||||   |||||| |||| |||||||||||||||   ||| | ||| ||||||| ||||||||||||    
T  47551360 atggttttaattttgctttcatcaagagattttggtatttgatgaaggatgaggtgagaattatgttcgatcaattccatgcaaacgag 47551272  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 226
Target Start/End: Original strand, 49455196 - 49455261
Alignment:
Q  161 gttttagttggtggtggaaggttttagtggcttgatgaggaatgtggtgaggcttaatttgtttga 226  Q
    ||||| |||||||| ||||||||||||||| |||||||| |||| ||||  || ||||||||||||    
T  49455196 gtttttgttggtggcggaaggttttagtgggttgatgagaaatgcggtggagcgtaatttgtttga 49455261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 261 - 409
Target Start/End: Complemental strand, 9367655 - 9367507
Alignment:
Q  261 tctcatcttcaatatgcggatgatactatttgtatagggaaggcgacggtgaacaattaatgggtgctcatggctcttttaaggggttttgagatggcat 360  Q
    ||||||||||||||||||||||||||| | || |||||| | ||  ||||| | |||   |||  ||| | |||  | || ||||||||||||||||| |    
T  9367655 tctcatcttcaatatgcggatgatactttatgcataggggaagcttcggtggataatctttggacgcttaaggcgttgttgaggggttttgagatggctt 9367556  T
Q  361 ccgggcttaaagttaatttctttaagagttgtcttatcggaatcaatgt 409  Q
    | || |||||||||||||| | |||||||||| | || ||||| |||||    
T  9367555 cgggtcttaaagttaatttttataagagttgtttgatgggaattaatgt 9367507  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 453
Target Start/End: Complemental strand, 43075240 - 43075135
Alignment:
Q  348 tttgagatggcatccgggcttaaagttaatttctttaagagttgtcttatcggaatcaatgtatcgcgggattttatggacatggcttgcaacttcttga 447  Q
    ||||||||||| |||||| | || || ||||| | |||||||||| | || |||||||||||    | |||||||||| | ||||| ||||| |||||||    
T  43075240 tttgagatggcttccgggttaaaggtgaatttttataagagttgtttgatgggaatcaatgtcaacccggattttatgaatatggcgtgcaatttcttga 43075141  T
Q  448 attgta 453  Q
    ||||||    
T  43075140 attgta 43075135  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 159
Target Start/End: Complemental strand, 11335888 - 11335783
Alignment:
Q  54 aaggagttttggcatttaatgaaggatgaggtgcatattttattctatcaatttcatgcaaacgaggtgatgcctaaaggattattgtcttatttcgtgg 153  Q
    |||||||||||| ||||  ||||| | ||| |||  ||||| ||  ||||||||||||||||||||||| |||| ||| | |||||| |||| || |||     
T  11335888 aaggagttttggtatttgttgaagaacgagatgcggattttgtttgatcaatttcatgcaaacgaggtggtgccaaaaagtttattggcttactttgtga 11335789  T
Q  154 ctttaa 159  Q
    ||||||    
T  11335788 ctttaa 11335783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 453
Target Start/End: Original strand, 14457830 - 14457935
Alignment:
Q  348 tttgagatggcatccgggcttaaagttaatttctttaagagttgtcttatcggaatcaatgtatcgcgggattttatggacatggcttgcaacttcttga 447  Q
    |||||||||||||||||  | || |||||||| | |||||||||| | || ||||| |||||  ||  ||| |||||||| ||||| || ||||| ||||    
T  14457830 tttgagatggcatccggattgaaggttaatttttataagagttgtttgatgggaattaatgtggcgacggaatttatggatatggcgtgaaactttttga 14457929  T
Q  448 attgta 453  Q
    ||||||    
T  14457930 attgta 14457935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 14431795 - 14431847
Alignment:
Q  340 taaggggttttgagatggcatccgggcttaaagttaatttctttaagagttgt 392  Q
    |||| |||||||||||||| |||||||| |||||||| || | ||||||||||    
T  14431795 taagaggttttgagatggcttccgggctaaaagttaacttttataagagttgt 14431847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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