View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1390-Insertion-20 (Length: 835)
Name: NF1390-Insertion-20
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390-Insertion-20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 622; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 7 - 731
Target Start/End: Complemental strand, 656539 - 655817
Alignment:
| Q |
7 |
actaacatgaaggctttatacaattacattatattcagtcgtggagtcccaacattgaaagaaaccaaaaaatggtgggtctcagtgttggcagaaaact |
106 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
656539 |
actaacatgaaggctttatacaattacaccatattcagccgtggagtcccaacattgaaagaaaccaaaaaatggtgagtctcagtgttggcagaaaact |
656440 |
T |
|
| Q |
107 |
aaaaatgatacaatgtcgacaacatacctattgagtgctgtgcaaaacaattttatgggcaaagaaacagcga-caaagcggaaggaagtttaggcgacg |
205 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
656439 |
aaaaatgatacgatgtcgataacatacctattgagtgctgtgcaaaacaattt-atgggcaaagaaagagcgatcaaagcggaaggaagtttaggcgacg |
656341 |
T |
|
| Q |
206 |
atagaaccgaccaatcaggcatttgggatgacaataaatggaaatgaataggaaaccaaagctaccagaaaaactttcattactggccctacttgaatat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
656340 |
atagaaccgaccaatcaggcatttgggatgacaataaatggaaatgaataggaaaccaaagctaccagaaaaactttcatcactggccctacttgaatat |
656241 |
T |
|
| Q |
306 |
cggaatcccgagataaactatcatcacttaaatcacataatgaacgataatgccaccagaaaaaagagaccatcactggtcatacttgaatatctatttc |
405 |
Q |
| |
|
| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
656240 |
ctgaatcccaagataaactatcatcacttaaatcacataatgaatgataatgccaccagaaaaaagagaccatcactggtcatacttgaatatctatttc |
656141 |
T |
|
| Q |
406 |
ttttcctttccctcatcacgggcattttcttagttatattaattgatttgtctttgataaatggaacctcctctctttaatatattccattctagaagag |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
656140 |
ttttcctttccctcatcacgggcattttcttagt--tattaattgatttgtctttgataaatggaacctcctctctttaatatattccattctagaagag |
656043 |
T |
|
| Q |
506 |
tgagattgaacaacaattgacatgaggctacatcaagtttatcattgaacaagctttaaatctttaaaatatatgtatatcataaatattgcaatgattt |
605 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
656042 |
tgagattgaacaacaattgacatgatgctacatcaagtttatcattgaacaagctttaaatctttaaaatatatgtatatcataaatattgcaatgattt |
655943 |
T |
|
| Q |
606 |
tcaaggtaacgaatatggtaaaccattactctaattgtaattaacataaaataaatttcactttctacaactgttatnnnnnnntgtagaaacaattgta |
705 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
655942 |
tcaaggtaacgaatatggtaaaccattactctaattgtaattaacgtaaaataaatttcactttctacaactgttataaaaaaaagtagaaacaattgta |
655843 |
T |
|
| Q |
706 |
agaactggatttgtacaagtccatag |
731 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
655842 |
agaactggatttgtacaagtccatag |
655817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 779 - 834
Target Start/End: Complemental strand, 655795 - 655740
Alignment:
| Q |
779 |
aaataacaaatttgtccaccagactccaatgatatcctttgctgaggtacaaattt |
834 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
655795 |
aaataacaaatttgtccaccaggctccaatgatatcctttgctgaggtacaaattt |
655740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 442 - 499
Target Start/End: Complemental strand, 2694618 - 2694561
Alignment:
| Q |
442 |
tattaattgatttgtctttgataaatggaacctcctctctttaatatattccattcta |
499 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
2694618 |
tattacttgatttgaacttgataaatggaacctcctctcttttatatattccattcta |
2694561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 2694689 - 2694628
Alignment:
| Q |
308 |
gaatcccgagataaactatcatcacttaaatcacataatgaacgataatgccaccagaaaaa |
369 |
Q |
| |
|
|||||| |||||||||| ||||||| | |||||||||||||| || ||||| |||||||||| |
|
|
| T |
2694689 |
gaatcctgagataaactttcatcacctgaatcacataatgaatgaaaatgctaccagaaaaa |
2694628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 135
Target Start/End: Complemental strand, 22381312 - 22381250
Alignment:
| Q |
73 |
aaaaaatggtgggtctcagtgttggcagaaaactaaaaatgatacaatgtcgacaacatacct |
135 |
Q |
| |
|
|||||||||| || | |||||||||||||||||||||| ||||| || ||| |||||||||| |
|
|
| T |
22381312 |
aaaaaatggtaagtattagtgttggcagaaaactaaaaacgatacgatatcggcaacatacct |
22381250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 16494 times since January 2019
Visitors: 3768