View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390-Insertion-21 (Length: 289)

Name: NF1390-Insertion-21
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390-Insertion-21
NF1390-Insertion-21
[»] chr8 (8 HSPs)
chr8 (7-289)||(2517422-2517705)
chr8 (215-289)||(1458947-1459021)
chr8 (215-289)||(2428654-2428728)
chr8 (223-287)||(2506451-2506515)
chr8 (240-289)||(2513062-2513111)
chr8 (192-287)||(2497724-2497817)
chr8 (228-287)||(2435034-2435093)
chr8 (209-287)||(2431625-2431703)


Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-150; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 7 - 289
Target Start/End: Complemental strand, 2517705 - 2517422
Alignment:
Q  7 acattctttttccgttttcttcttttgttcagcctgctttggtttggaaaagaaccaatattgaatgagtcatgtacttattaggaactgaaagttcatt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2517705 acattctttttccgttttcttcttttgttcagcctgctttggtttggaaaagaaccaatattgaatgagtcatgtacttattaggaactgaaagttcatt 2517606  T
Q  107 gcttttatataattttcccatcttatagttatgatatcttctactttatgttttatttttgagtatatattatacttattaggaactgccattctgttct 206  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2517605 gcttttatataatcttcccatcttatagttatgatatcttctattttatgttttatttttgagtatatattatacttattaggaactgccattctgttct 2517506  T
Q  207 gct-ttttgatatattttgtgtttttgtttgagcacaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctc 289  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2517505 gcttttttgatatattttgtgtttttgtttgagcacaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctc 2517422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 1458947 - 1459021
Alignment:
Q  215 atatattttgtgtttttgtttgagcacaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctc 289  Q
    |||||| ||||||||||||||||  ||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  1458947 atatatgttgtgtttttgtttgactacaggtatgcctggaatgactgcttatgctggtttctttgaagtaggctc 1459021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 215 - 289
Target Start/End: Original strand, 2428654 - 2428728
Alignment:
Q  215 atatattttgtgtttttgtttgagcacaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctc 289  Q
    |||||| ||||||||||||||||  ||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  2428654 atatatgttgtgtttttgtttgactacaggtatgcctggaatgactgcttatgctggtttctttgaagtaggctc 2428728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 2506515 - 2506451
Alignment:
Q  223 tgtgtttttgtttgagcacaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggc 287  Q
    ||||||||| ||||||  ||||||||||||||||||| |||||||||||||||||||||||||||    
T  2506515 tgtgtttttctttgagtgcaggtatgccaggaatgactgcttatgctggtttctttgaagtaggc 2506451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 2513111 - 2513062
Alignment:
Q  240 acaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggctc 289  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  2513111 acaggtatgccaggaatgactgcttattctggtttctttgaagtaggctc 2513062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 287
Target Start/End: Complemental strand, 2497817 - 2497724
Alignment:
Q  192 ctgccattctgttctgctttttgatatattttgtgtttttgtttgagcacaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggc 287  Q
    ||||||||||||| ||| |||| | |||| |||| ||| |||  || |||||||||||||||||| || ||||||||||||||||||||| |||||    
T  2497817 ctgccattctgttgtgcattttaacatatgttgtttttctgt--gaacacaggtatgccaggaataactgcttatgctggtttctttgaactaggc 2497724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 2435034 - 2435093
Alignment:
Q  228 ttttgtttgagcacaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggc 287  Q
    ||||||||||| ||||||||||| |||||||| || |||||||||||||||||| |||||    
T  2435034 ttttgtttgagtacaggtatgccgggaatgactgcatatgctggtttctttgaattaggc 2435093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 287
Target Start/End: Original strand, 2431625 - 2431703
Alignment:
Q  209 tttttgatatattttgtgtttttgtttgagcacaggtatgccaggaatgaccgcttatgctggtttctttgaagtaggc 287  Q
    ||||||| ||||||  || ||||||||||| ||||||||||  ||| |||| || |||| ||||||||||||| |||||    
T  2431625 tttttgacatatttcatgcttttgtttgagtacaggtatgctgggattgactgcatatgttggtttctttgaattaggc 2431703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 13435 times since January 2019
Visitors: 8302