View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390-Insertion-22 (Length: 789)
Name: NF1390-Insertion-22
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390-Insertion-22 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 761; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 761; E-Value: 0
Query Start/End: Original strand, 8 - 789
Target Start/End: Original strand, 937355 - 938138
Alignment:
| Q |
8 |
gtatactggtttgatcaagtgtgagaaaccgaataggaatatatatggatttatggcgaatatggaaatcgatggtaagaagttatcacttggatcaacc |
107 |
Q |
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| T |
937355 |
gtatactggtttgatcaagtgtgagaaaccgaataggaatatatatggatttatggcgaatatggaaatcgatggtaagaagttatcacttggatcaacc |
937454 |
T |
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| Q |
108 |
aacattgtgcttagaggatgtgagcttaagaatactagttgggcacttggtgttgcagtctattgtggccgcgagactaaagctatgcttaacaattcag |
207 |
Q |
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| T |
937455 |
aacattgtgcttagaggatgtgagcttaagaatactagttgggcacttggtgttgcagtctattgtggccgcgagactaaagctatgcttaacaattcag |
937554 |
T |
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| Q |
208 |
gagctccatcaaaaagaagtagactagagacgcggatgaattatgaaatcattatgttgtcgttctttcttgttgcatcgtgtacaatcacgtctgtttg |
307 |
Q |
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| T |
937555 |
gagctccatcgaaaagaagtagactagagacgcggatgaattatgaaatcattatgttgtcgttctttcttgttgcattgtgtacaatcacgtctgtttg |
937654 |
T |
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| Q |
308 |
tactgcggtttggttgaagcgccataaggatgagttgaatctgttgccttattataggaaacttgatttttcaaagccggtagttgaagactataagtac |
407 |
Q |
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| T |
937655 |
tgctgcggtttggttgaagcgccataaggatgagttgaatctgttgccttattataggaaacttgatttttcaaagccggtagttgaagactataagtac |
937754 |
T |
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| Q |
408 |
tatggatggggattggaaatctttttcacattccttatgtcagttatagtttaccaggtcatgattcctattgctttgtacatttctatggagcttgttc |
507 |
Q |
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| T |
937755 |
tatggatggggattggaaatctttttcacattccttatgtcagttatagtttaccaggtcatgattcctattgctttgtacatttctatggagcttgttc |
937854 |
T |
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| Q |
508 |
gtgttggccaggcctatttcatgatcgaagacgatcgattgtatgatgaggctaccaattcaaagtttcagtgcagagctttgaatattaatgaagattt |
607 |
Q |
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| T |
937855 |
gtgttggccaggcctatttcatgatcgaagacgatcgattgtatgatgaggctaccaattcaaagtttcagtgcagagctttgaatattaatgaagattt |
937954 |
T |
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| Q |
608 |
agggcaaattaagtatgtgttctcagataaaactggtacacttactgaaaataagatggagtttcaatgtgcaagcatacgaggagtcgattacagttcc |
707 |
Q |
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| T |
937955 |
agggcaaattaagtatgtgttctcagataaaactggtacacttactgaaaataagatggagtttcaatgtgcaagcatacgaggagtcgattacagttcc |
938054 |
T |
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| Q |
708 |
acaaacaccagcacggagaatgaactaggtgaatactcagtgcaaggtgagattgatttcttcta--tttttactgatatgtgt |
789 |
Q |
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| T |
938055 |
acaaacaccagcacggagaatgaactaggtgaatactcagtgcaaggtgagattgatttcttctatttttttactgatatgtgt |
938138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 2e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 14 - 706
Target Start/End: Original strand, 16941845 - 16942537
Alignment:
| Q |
14 |
tggtttgatcaagtgtgagaaaccgaataggaatatatatggatttatggcgaatatggaaatcgatggtaagaagttatcacttggatcaaccaacatt |
113 |
Q |
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| T |
16941845 |
tggtttgattaagtgcgagaaaccaaataggaatatatatggatttcaggctacaatggaggttgatgaaaagagattgtcacttggttcctcgaatatt |
16941944 |
T |
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| Q |
114 |
gtgcttagaggatgtgagcttaagaatactagttgggcacttggtgttgcagtctattgtggccgcgagactaaagctatgcttaacaattcaggagctc |
213 |
Q |
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| T |
16941945 |
gtacttagaggatgtgaacttaagaatactaattgtgtggttggtgttgccgtgtattgtggtcgtgagacaaaagctatgctcaacaactcaggagctc |
16942044 |
T |
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| Q |
214 |
catcaaaaagaagtagactagagacgcggatgaattatgaaatcattatgttgtcgttctttcttgttgcatcgtgtacaatcacgtctgtttgtactgc |
313 |
Q |
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| T |
16942045 |
cgtctaagaggagccgtcttgaaacacaaatgaactctgagataatcatgctttcgttctttcttgtagctttgtgttcagttacttcagtttgcgctgc |
16942144 |
T |
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| Q |
314 |
ggtttggttgaagcgccataaggatgagttgaatctgttgccttattataggaaacttgatttttcaaagccggtagttgaagactataagtactatgga |
413 |
Q |
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| T |
16942145 |
tgtttggttaaagcgaaacaagaatgaattgaaccgattgccttattataggaaattggatttttcaaagggaaaagaggaaagttatcaatattatgga |
16942244 |
T |
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| Q |
414 |
tggggattggaaatctttttcacattccttatgtcagttatagtttaccaggtcatgattcctattgctttgtacatttctatggagcttgttcgtgttg |
513 |
Q |
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|||||| |||||||| ||||||||||||| ||||| ||||||||||||||||| ||||| || || | ||||||||||||||||| ||||||||||||| |
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| T |
16942245 |
tggggagtggaaatccttttcacattcctcatgtcggttatagtttaccaggttatgatcccgatatccttgtacatttctatggaacttgttcgtgttg |
16942344 |
T |
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| Q |
514 |
gccaggcctatttcatgatcgaagacgatcgattgtatgatgaggctaccaattcaaagtttcagtgcagagctttgaatattaatgaagatttagggca |
613 |
Q |
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| T |
16942345 |
gtcaggcgtacttcatgatcaaagattctagattgtatgatgaggcaacaaattcaagatttcagtgtagggccttgaatatcaatgaagatttagggca |
16942444 |
T |
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| Q |
614 |
aattaagtatgtgttctcagataaaactggtacacttactgaaaataagatggagtttcaatgtgcaagcatacgaggagtcgattacagttc |
706 |
Q |
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| T |
16942445 |
aattaaatatgtcttttcggacaaaactggcactctgactgagaacaagatggagtttcaatgcgctagtatttggggtgtcgattacagttc |
16942537 |
T |
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