View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390-Insertion-25 (Length: 248)
Name: NF1390-Insertion-25
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390-Insertion-25 |
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| [»] scaffold0175 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: scaffold0175 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0175
Description:
Target: scaffold0175; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 153
Target Start/End: Original strand, 27796 - 27941
Alignment:
| Q |
8 |
tgtttgtgttaacatgaatcatttgtaaaagtaaatactatagctatgagcctgtaacaggacaaacttcaaaattccaatccccaatatctctttacta |
107 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| |
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| T |
27796 |
tgtttgtgttaacatgaatcatttgtaaaattaaatactatagctatgagcctgtaacaggacgaacttcaaaattccaatccctaatatctcttttcta |
27895 |
T |
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| Q |
108 |
ttggaaagaagacatctttcgttagtaaaaagaagagtaaaatgca |
153 |
Q |
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| T |
27896 |
ttggaaagaaggcatatttcgttagtaaaaagaagagtaaaatgca |
27941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 8 - 153
Target Start/End: Complemental strand, 29276453 - 29276309
Alignment:
| Q |
8 |
tgtttgtgttaacatgaatcatttgtaaaagtaaatactatagctatgagcctgtaacaggacaaacttcaaaattccaatccccaatatctctttacta |
107 |
Q |
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| T |
29276453 |
tgtttgtgttaacatgaatcatttgtaaaagtaaatactatagctatgagcatgtaacacgacaaacttcaaaattctaatccccaacatctcttttcta |
29276354 |
T |
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| Q |
108 |
ttggaaagaagacatctttcgttagtaaaaagaagagtaaaatgca |
153 |
Q |
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| T |
29276353 |
ttgg-aagaaggcatatttctttagtaaaaagaagagtaaaatgca |
29276309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 29276273 - 29276178
Alignment:
| Q |
150 |
tgcaatagtatcatattcctaaaggaagagcttgaaatataattaatggatcatcacaagactttatacggtatagacatgtcccatcttatattgata |
248 |
Q |
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| T |
29276273 |
tgcaatagtatcatattcctaagggaagagcttgaaatatat---atggatcatcacaagactttatacggtatagacatgtcccatcttatattgata |
29276178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 55858147 - 55858252
Alignment:
| Q |
8 |
tgtttgtgttaacatgaatcatttgtaaaagtaaatactatagctatgagcctgtaacaggacaaacttcaaaattccaatccccaatatctctttacta |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| |||||||||| ||| |
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| T |
55858147 |
tgtttgtgttaacatgaatcatttgtaaaagtaaatactatagctatgagcatgtaacacgacaaacttcaaaattctaatccccgatatctcttttcta |
55858246 |
T |
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| Q |
108 |
ttggaa |
113 |
Q |
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|||||| |
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| T |
55858247 |
ttggaa |
55858252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 55858319 - 55858414
Alignment:
| Q |
150 |
tgcaatagtatcatattcctaaaggaagagcttgaaatataattaatggatcatcacaagactttatacggtatagacatgtcccatcttatattgata |
248 |
Q |
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|||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55858319 |
tgcaatagtatcatattcctaaggtaagagcttgaaatatat---atggatcatcacaagactttatacggtatagacatgtcccatcttatattgata |
55858414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 31502728 - 31502800
Alignment:
| Q |
175 |
aagagcttgaaatataattaatggatcatcaca--agactttatacggtatagacatgtcccatcttatattgata |
248 |
Q |
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| T |
31502728 |
aagagcttgaaatatat---atggatcatcacacaagactttatacggtgtagacatgtcccatcctatattgata |
31502800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 153
Target Start/End: Original strand, 31502648 - 31502677
Alignment:
| Q |
124 |
tttcgttagtaaaaagaagagtaaaatgca |
153 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
31502648 |
tttcgttagtaaaaagaagagtaaaatgca |
31502677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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