View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390-Insertion-27 (Length: 199)

Name: NF1390-Insertion-27
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390-Insertion-27
NF1390-Insertion-27
[»] chr4 (8 HSPs)
chr4 (8-199)||(18727962-18728153)
chr4 (8-199)||(18686036-18686227)
chr4 (10-199)||(18651940-18652129)
chr4 (8-199)||(18720526-18720717)
chr4 (8-199)||(18675996-18676187)
chr4 (8-171)||(18693563-18693729)
chr4 (87-173)||(18076774-18076860)
chr4 (165-198)||(18695999-18696032)
[»] chr6 (18 HSPs)
chr6 (13-199)||(27657133-27657317)
chr6 (68-187)||(27607613-27607732)
chr6 (69-199)||(28782728-28782855)
chr6 (23-199)||(28789931-28790096)
chr6 (114-199)||(26659540-26659625)
chr6 (114-199)||(26765511-26765596)
chr6 (69-198)||(26638988-26639116)
chr6 (69-198)||(26744954-26745082)
chr6 (123-199)||(27600863-27600939)
chr6 (50-166)||(26953282-26953394)
chr6 (117-179)||(26659623-26659685)
chr6 (117-179)||(26765594-26765656)
chr6 (87-173)||(27424695-27424781)
chr6 (81-199)||(26650121-26650238)
chr6 (81-199)||(26756089-26756206)
chr6 (68-166)||(26626820-26626914)
chr6 (68-166)||(26732797-26732891)
chr6 (120-199)||(27600677-27600759)
[»] scaffold0419 (1 HSPs)
scaffold0419 (69-199)||(11075-11202)
[»] scaffold0277 (2 HSPs)
scaffold0277 (23-199)||(970-1137)
scaffold0277 (23-199)||(10103-10268)
[»] scaffold0003 (1 HSPs)
scaffold0003 (87-173)||(62582-62668)
[»] chr1 (1 HSPs)
chr1 (106-160)||(26139697-26139751)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 18727962 - 18728153
Alignment:
Q  8 atatcatgtctcgttatttgaaaaactcttccaggtagaaacaattaattgatttataaagataatgatgataatgatgtacctggaccaaggaatatat 107  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18727962 atatcatgtctcgtcatttgaaaaactcttccaggtagaaacaattaattgatttataaagataataatgataatgatgtacctggaccaaggaatatat 18728061  T
Q  108 ctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgacactaaagctagatgttgctgctgcaaaatttctg 199  Q
    ||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18728062 ctatccatggtgttccttttcttttgtttcagtaagcaccaagttccgcatgcctgacactaaagctagatgttgctgctgcaaaatttctg 18728153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 18686036 - 18686227
Alignment:
Q  8 atatcatgtctcgttatttgaaaaactcttccaggtagaaacaattaattgatttataaagataatgatgataatgatgtacctggaccaaggaatatat 107  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||    
T  18686036 atatcatgtctcgtcatttgaaaaactcttccagatagaaacaattaattggtttataaagataataatgataatgatgtacctggatcaaggaatatat 18686135  T
Q  108 ctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgacactaaagctagatgttgctgctgcaaaatttctg 199  Q
    ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18686136 ctatccatggtgttccttttctattgtttcattaagcaccaagttccgcatgcctgacactaaagctagatgttgctgctgcaaaatttctg 18686227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 10 - 199
Target Start/End: Original strand, 18651940 - 18652129
Alignment:
Q  10 atcatgtctcgttatttgaaaaactcttccaggtagaaacaattaattgatttataaagataatgatgataatgatgtacctggaccaaggaatatatct 109  Q
    |||||||||| | ||||||||||||||| |||||||| ||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  18651940 atcatgtctcatcatttgaaaaactctttcaggtagagacaattaattggtttataaagataataatgacaatgatgtacctggaccaaggaatatatct 18652039  T
Q  110 agccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgacactaaagctagatgttgctgctgcaaaatttctg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18652040 agccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcctgacactaaagctagatgttgctgctgcaaaatttctg 18652129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 18720526 - 18720717
Alignment:
Q  8 atatcatgtctcgttatttgaaaaactcttccaggtagaaacaattaattgatttataaagataatgatgataatgatgtacctggaccaaggaatatat 107  Q
    |||||||||||| | |||||||||||||||| |||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  18720526 atatcatgtctcatcatttgaaaaactcttctaggtagaagcaattaattgatttattaagataataatgataatgatgtacctggaccaaggaatatat 18720625  T
Q  108 ctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgacactaaagctagatgttgctgctgcaaaatttctg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||| |||||||||||||||||||||||||||    
T  18720626 ctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcctggcaataaaactagatgttgctgctgcaaaatttctg 18720717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 18675996 - 18676187
Alignment:
Q  8 atatcatgtctcgttatttgaaaaactcttccaggtagaaacaattaattgatttataaagataatgatgataatgatgtacctggaccaaggaatatat 107  Q
    |||||||||||| | |||||||||||||||| |||||||| ||||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||||    
T  18675996 atatcatgtctcatcatttgaaaaactcttctaggtagaagcaattaattgagttattaagataataatgataatgatgtacctggaccaagaaatatat 18676095  T
Q  108 ctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgacactaaagctagatgttgctgctgcaaaatttctg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||    
T  18676096 ctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcctgacaataaaactagatgttgctgctgcaaaatttctg 18676187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 137; E-Value: 9e-72
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 18693563 - 18693729
Alignment:
Q  8 atatcatgtctcgttatttgaaaaactcttccaggtagaaacaattaattgatttataaagat---aatgatgataatgatgtacctggaccaaggaata 104  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||   ||| ||||||||||||||||||||||||||||||    
T  18693563 atatcatgtctcgtcatttgaaaaactcttccaggtagaaacaattaattggtttataaagatgataataatgataatgatgtacctggaccaaggaata 18693662  T
Q  105 tatctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgacactaaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18693663 tatctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcctgacactaaa 18693729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 18076860 - 18076774
Alignment:
Q  87 tacctggaccaaggaatatatctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgacactaaagc 173  Q
    ||||| ||||| ||||| |||||| | | |||||||||||||| |||||||||||||||| |||||  ||||||| |||||||||||    
T  18076860 taccttgaccatggaatctatctatcaacggtgttccttttcttttgtttcagtaagcacgaagtttggcatgcctgacactaaagc 18076774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 198
Target Start/End: Original strand, 18695999 - 18696032
Alignment:
Q  165 cactaaagctagatgttgctgctgcaaaatttct 198  Q
    ||||||||||||||||||||||||||||||||||    
T  18695999 cactaaagctagatgttgctgctgcaaaatttct 18696032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 3e-59; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 27657133 - 27657317
Alignment:
Q  13 atgtctcgttatttgaaaaactcttccaggtagaaacaattaattgatttataaagataatgatgataatgatgtacctggaccaaggaatatatctagc 112  Q
    ||||||| | |||||| ||||| ||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  27657133 atgtctcatcatttgataaactattcaaggtagaaataattaattgatttataaagataataatgataatgatgtacctggaccaaggaatctatctagc 27657232  T
Q  113 catggtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgacactaaagctagatgttgctgctgcaaaatttctg 199  Q
    |||||||||||| |||  |||||||| |||| ||||||||| ||||| | |||||||||||||||||||| ||||||||||||||||    
T  27657233 catggtgttcctattc--ttgtttcattaagaaccaagttctgcatgactgacactaaagctagatgttgttgctgcaaaatttctg 27657317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 68 - 187
Target Start/End: Original strand, 27607613 - 27607732
Alignment:
Q  68 gataatgatgataatgatgtacctggaccaaggaatatatctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgacac 167  Q
    |||||| |||||||||||||||||||| ||||||||  ||||||||||||||||||  |||| |||||||| |||| ||||||||||||||| | |||||    
T  27607613 gataataatgataatgatgtacctggagcaaggaatcaatctagccatggtgttccaattcttttgtttcattaagaaccaagttccgcatggctgacac 27607712  T
Q  168 taaagctagatgttgctgct 187  Q
    ||||||||||||||| ||||    
T  27607713 taaagctagatgttgttgct 27607732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 69 - 199
Target Start/End: Complemental strand, 28782855 - 28782728
Alignment:
Q  69 ataatgatgataatgatgtacctggaccaaggaatatatctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgacact 168  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||| | | |||||||  |   ||||||||||||||||||||||  ||||||| ||||||    
T  28782855 ataataatgataatgatgtacctggacaaaggaatctatctagcaaagatgttcctcat---ttgtttcagtaagcaccaagttttgcatgcctgacact 28782759  T
Q  169 aaagctagatgttgctgctgcaaaatttctg 199  Q
    |||||||||||||| ||||||||||||||||    
T  28782758 aaagctagatgttgttgctgcaaaatttctg 28782728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 28790096 - 28789931
Alignment:
Q  23 atttgaaaaactcttccaggtagaaacaattaattgatttataaagataatgatgataatgatgtacctggaccaaggaatatatctagccatggtgttc 122  Q
    ||||||||||||  | |||||||||||||||||||  |||||||      | ||||||||||||||||||||| ||||||| |||||||| ||||||  |    
T  28790096 atttgaaaaacttatgcaggtagaaacaattaattagtttataa------taatgataatgatgtacctggacgaaggaatctatctagcaatggtg--c 28790005  T
Q  123 cttttctattgtttcagtaagcaccaagttccgcatgcccgacactaaagctagatgttgctgctgcaaaatttctg 199  Q
    || ||   ||||||||||||| ||||||||  ||||||| ||| |||||| |||||||||||||||| |||||||||    
T  28790004 ctctt---ttgtttcagtaagaaccaagttttgcatgcctgactctaaagatagatgttgctgctgccaaatttctg 28789931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 114 - 199
Target Start/End: Complemental strand, 26659625 - 26659540
Alignment:
Q  114 atggtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgacactaaagctagatgttgctgctgcaaaatttctg 199  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||| | ||||||||||||||||  || ||||||||||||||||    
T  26659625 atggtgttccttttcttttgtttcagtaagcaccaagttctgcatgtctgacactaaagctagatactgttgctgcaaaatttctg 26659540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 114 - 199
Target Start/End: Complemental strand, 26765596 - 26765511
Alignment:
Q  114 atggtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgacactaaagctagatgttgctgctgcaaaatttctg 199  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||| | ||||||||||||||||  || ||||||||||||||||    
T  26765596 atggtgttccttttcttttgtttcagtaagcaccaagttctgcatgtctgacactaaagctagatactgttgctgcaaaatttctg 26765511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 69 - 198
Target Start/End: Complemental strand, 26639116 - 26638988
Alignment:
Q  69 ataatgatgataatgatgtacctggaccaaggaatatatctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgacact 168  Q
    ||||| |||||||| |||||||||||||||||||| ||    ||| ||||||| ||||| | |||||||||| ||||||| |||||||||||| |||| |    
T  26639116 ataattatgataataatgtacctggaccaaggaattta----gccttggtgttacttttattttgtttcagttagcaccatgttccgcatgcctgacagt 26639021  T
Q  169 aaag---ctagatgttgctgctgcaaaatttct 198  Q
    ||||   |||||||||||||||| |||||||||    
T  26639020 aaagcttctagatgttgctgctgaaaaatttct 26638988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 69 - 198
Target Start/End: Complemental strand, 26745082 - 26744954
Alignment:
Q  69 ataatgatgataatgatgtacctggaccaaggaatatatctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgacact 168  Q
    ||||| |||||||| |||||||||||||||||||| ||    ||| ||||||| ||||| | |||||||||| ||||||| |||||||||||| |||| |    
T  26745082 ataattatgataataatgtacctggaccaaggaattta----gccttggtgttacttttattttgtttcagttagcaccatgttccgcatgcctgacagt 26744987  T
Q  169 aaag---ctagatgttgctgctgcaaaatttct 198  Q
    ||||   |||||||||||||||| |||||||||    
T  26744986 aaagcttctagatgttgctgctgaaaaatttct 26744954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 27600863 - 27600939
Alignment:
Q  123 cttttctattgtttcagtaagcaccaagttccgcatgcccgacactaaagctagatgttgctgctgcaaaatttctg 199  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||  |||||||||||| ||||||    
T  27600863 cttttcttttgtttcagtaagcaccaagttccgcatgccggacactacagctagatactgctgctgcaaactttctg 27600939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 166
Target Start/End: Complemental strand, 26953394 - 26953282
Alignment:
Q  50 aattaattgatttataaagataatgatgataatgatgtacctggaccaaggaatatatctagccatggtgttccttttctattgtttcagtaagcaccaa 149  Q
    ||||||||| ||||||||| |||| ||||||||||||||| | ||| |||||    |||||| ||| ||||||||||||| ||||||||||||||| |||    
T  26953394 aattaattggtttataaagttaataatgataatgatgtactttgactaagga----atctagtcattgtgttccttttcttttgtttcagtaagcatcaa 26953299  T
Q  150 gttccgcatgcccgaca 166  Q
      ||| |||||| ||||    
T  26953298 actccacatgcctgaca 26953282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 26659685 - 26659623
Alignment:
Q  117 gtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgacactaaagctagatg 179  Q
    ||||||||||||| |||||||| |||||||||||||  ||||||| |||||||||||||||||    
T  26659685 gtgttccttttcttttgtttcaataagcaccaagttgtgcatgcctgacactaaagctagatg 26659623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 26765656 - 26765594
Alignment:
Q  117 gtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgacactaaagctagatg 179  Q
    ||||||||||||| |||||||| |||||||||||||  ||||||| |||||||||||||||||    
T  26765656 gtgttccttttcttttgtttcaataagcaccaagttgtgcatgcctgacactaaagctagatg 26765594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 173
Target Start/End: Original strand, 27424695 - 27424781
Alignment:
Q  87 tacctggaccaaggaatatatctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgacactaaagc 173  Q
    ||||| ||||| ||||| |||||| | | |||||||||||||| |||||||||||||||| |||||  ||||||| |||||||||||    
T  27424695 taccttgaccatggaatctatctatcaacggtgttccttttcttttgtttcagtaagcacgaagtttggcatgcctgacactaaagc 27424781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 26650238 - 26650121
Alignment:
Q  81 atgatgtacctggaccaaggaatatatctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgacactaaag---ctaga 177  Q
    ||||||||||| ||||||||||     ||||||||| |||||||||| | |||||||||| || ||||| | ||||||| | ||||||||||   |||||    
T  26650238 atgatgtaccttgaccaaggaaa----ctagccatgatgttccttttgttttgtttcagtgaggaccaaatcccgcatgtctgacactaaagctactaga 26650143  T
Q  178 tgttgctgctgcaaaatttctg 199  Q
    |  |||||||||||||||||||    
T  26650142 ttatgctgctgcaaaatttctg 26650121  T

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Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 26756206 - 26756089
Alignment:
Q  81 atgatgtacctggaccaaggaatatatctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgacactaaag---ctaga 177  Q
    ||||||||||| ||||||||||     ||||||||| |||||||||| | |||||||||| || ||||| | ||||||| | ||||||||||   |||||    
T  26756206 atgatgtaccttgaccaaggaaa----ctagccatgatgttccttttgttttgtttcagtgaggaccaaatcccgcatgtctgacactaaagctactaga 26756111  T
Q  178 tgttgctgctgcaaaatttctg 199  Q
    |  |||||||||||||||||||    
T  26756110 ttatgctgctgcaaaatttctg 26756089  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 26626914 - 26626820
Alignment:
Q  68 gataatgatgataatgatgtacctggaccaaggaatatatctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgaca 166  Q
    |||||| | ||||||||||||||| ||| |||||||    | || |||| |||||||||||| |||||||| | |||||||| |||| |||||| ||||    
T  26626914 gataataacgataatgatgtaccttgactaaggaat----ccagtcatgttgttccttttcttttgtttcattcagcaccaaattccacatgcctgaca 26626820  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 68 - 166
Target Start/End: Complemental strand, 26732891 - 26732797
Alignment:
Q  68 gataatgatgataatgatgtacctggaccaaggaatatatctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgaca 166  Q
    |||||| | ||||||||||||||| ||| |||||||    | || |||| |||||||||||| |||||||| | |||||||| |||| |||||| ||||    
T  26732891 gataataacgataatgatgtaccttgactaaggaat----ccagtcatgttgttccttttcttttgtttcattcagcaccaaattccacatgcctgaca 26732797  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 199
Target Start/End: Original strand, 27600677 - 27600759
Alignment:
Q  120 ttccttttctattgtttcagtaagcaccaagttccgcatgcccga---cactaaagctagatgttgctgctgcaaaatttctg 199  Q
    |||||||||| || | || |||||||||| |||| ||||||| ||   || ||||||||||| ||||||||||||| ||||||    
T  27600677 ttccttttcttttttgtctgtaagcaccatgttctgcatgcctgatgacaataaagctagatcttgctgctgcaaactttctg 27600759  T

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Target: scaffold0419 (Bit Score: 77; Significance: 6e-36; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 69 - 199
Target Start/End: Complemental strand, 11202 - 11075
Alignment:
Q  69 ataatgatgataatgatgtacctggaccaaggaatatatctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgacact 168  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||   ||||||||||||||||||||||  ||||||| ||||||    
T  11202 ataataatgataatgatgtacctggacgaaggaatctatctagcaatggtgttcctctt---ttgtttcagtaagcaccaagttttgcatgcctgacact 11106  T
Q  169 aaagctagatgttgctgctgcaaaatttctg 199  Q
    |||||||||| |||||||||| |||||||||    
T  11105 aaagctagatattgctgctgccaaatttctg 11075  T

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Target: scaffold0277 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 23 - 199
Target Start/End: Original strand, 970 - 1137
Alignment:
Q  23 atttgaaaaactcttccaggtagaaacaattaattgatttataaagataatgatgataatgatgtacctggaccaaggaatatatctagccatggtgttc 122  Q
    ||||||||||||  | |||||||||||||||||||  |||||||      | ||||||||||||||||||||| ||||||| |||||||| | | |||||    
T  970 atttgaaaaacttatgcaggtagaaacaattaattagtttataa------taatgataatgatgtacctggacgaaggaatctatctagcaaagatgttc 1063  T
Q  123 cttttctattgtttcagtaagcaccaagttccgcatgcccgacactaaagctagatgttgctgctgcaaaatttctg 199  Q
    ||  |   ||||||||||||||||||||||  ||||||| |||||||||||||||||||| ||||||||||||||||    
T  1064 ctcat---ttgtttcagtaagcaccaagttttgcatgcctgacactaaagctagatgttgttgctgcaaaatttctg 1137  T

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Target: scaffold0277; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 23 - 199
Target Start/End: Original strand, 10103 - 10268
Alignment:
Q  23 atttgaaaaactcttccaggtagaaacaattaattgatttataaagataatgatgataatgatgtacctggaccaaggaatatatctagccatggtgttc 122  Q
    ||||||||||||  | |||||||||||||||||||  |||||||      | ||||||||||||||||||||| ||||||| |||||||| ||||||  |    
T  10103 atttgaaaaacttatgcaggtagaaacaattaattagtttataa------taatgataatgatgtacctggacgaaggaatctatctagcaatggtg--c 10194  T
Q  123 cttttctattgtttcagtaagcaccaagttccgcatgcccgacactaaagctagatgttgctgctgcaaaatttctg 199  Q
    || ||   ||||||||||||| ||||||||  ||||||| ||| |||||| |||||||||||||||| |||||||||    
T  10195 ctctt---ttgtttcagtaagaaccaagttttgcatgcctgactctaaagatagatgttgctgctgccaaatttctg 10268  T

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Target: scaffold0003 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 62668 - 62582
Alignment:
Q  87 tacctggaccaaggaatatatctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgcccgacactaaagc 173  Q
    ||||| ||||| ||||| |||||| | | |||||||||||||| |||||||||||||||| |||||  ||||||| |||||||||||    
T  62668 taccttgaccatggaatctatctatcaacggtgttccttttcttttgtttcagtaagcacgaagtttggcatgcctgacactaaagc 62582  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 160
Target Start/End: Complemental strand, 26139751 - 26139697
Alignment:
Q  106 atctagccatggtgttccttttctattgtttcagtaagcaccaagttccgcatgc 160  Q
    |||||||| ||||||||||||||| |||||||| ||||||||||||||| |||||    
T  26139751 atctagccttggtgttccttttcttttgtttcattaagcaccaagttccacatgc 26139697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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