View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390-Insertion-29 (Length: 667)
Name: NF1390-Insertion-29
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390-Insertion-29 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 214 - 667
Target Start/End: Original strand, 53424378 - 53424831
Alignment:
| Q |
214 |
aactttatattgatggtgtatatccattaatcttcttgatataccgtaaattaaattaaaaaactttaaaatgcataccttgttgaattgacctattgga |
313 |
Q |
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| T |
53424378 |
aactttatattgatggtgtatatccattaatcttcttgatataccgtaaattaaattaaaaaactttaaaatgcataccttgttgaattgacatattgga |
53424477 |
T |
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| Q |
314 |
ggattgtggcagcatcttttgttcttaccacggttgctgggaaatcataatttcttgcctctcctccttcttggtcaataatatgaacaagacctaatcc |
413 |
Q |
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| T |
53424478 |
ggattgtggcagcatctcttgttcttaccacggttgctgggaagtcataatttcttgcctctcctccttcttggtcaataatatgaacaagacctaatcc |
53424577 |
T |
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| Q |
414 |
acccatctcttgcaccattttaatcttgtcatagattgtgtaaccatcatctatgccatcacatatgacaatctttcctttgactttgttcgtatctaat |
513 |
Q |
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| T |
53424578 |
acccatctcttgcgccattttaatcttgtcatagattgtgtaaccatcatctatgccatcacatatgacaatctttcctttgactttgttcgtatctaat |
53424677 |
T |
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| Q |
514 |
gaatttgggtgacacatcctgcatttaacaaacaataataannnnnnnngattaattatgcccagcaaacaagtttaagttaatttattgttatggttat |
613 |
Q |
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| T |
53424678 |
gaatttgggtgacacatcctgcatttaacaaacaataataattttttttgattaattatgcccaacaaacaagtttaagttaattaattgttatggttat |
53424777 |
T |
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| Q |
614 |
gcatgcttacgtaccttgcttcagctaaatctgcagtagttgtcttgacagcct |
667 |
Q |
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| T |
53424778 |
gcatgcttacgtaccttgcttcagctaaatctgcagtagttgtcttgacagcct |
53424831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 8 - 223
Target Start/End: Original strand, 53423942 - 53424158
Alignment:
| Q |
8 |
ggattcaaaagcaaaatttcaaataaacattttctttaaatatagtttagcttgtgtagtagggannnnnnnnnnnnnnnnnn--gtcattagtcgtgag |
105 |
Q |
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| T |
53423942 |
ggattcaaaagcaaaatttcaaataaacatttactttaaatatagtt-agcttgtgtagtagggattttattttttattttttttgtcattagtcgtgag |
53424040 |
T |
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| Q |
106 |
ttatagcaaatatgagaaagtgagagagatgaactcaaagtgtaaaattggattacattgaaaaccaatcacaaattgaatagttctgattgaatgtgag |
205 |
Q |
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| T |
53424041 |
ttatagcaaatatgagaaagtgagagagatgaactcaaagtgtaaaattggattacattgaaaaccaatcacaaattgaatagttctaattgaatgtgag |
53424140 |
T |
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| Q |
206 |
tgtaaaataactttatat |
223 |
Q |
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| T |
53424141 |
tgtaaaataactttatat |
53424158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 284 - 527
Target Start/End: Original strand, 53431594 - 53431843
Alignment:
| Q |
284 |
atgcataccttgttgaattgacctattggaggattgtggcagcatcttttgttcttaccacggttgctgggaaatc---ataatttcttgcctctcctcc |
380 |
Q |
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| T |
53431594 |
atgcataccttgttgaattggcgtattggaggagtgtggcaacatcttttgatcttaccactgttgctgggaagtctccataactacgtatcatagctcc |
53431693 |
T |
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| Q |
381 |
ttcttggtcaataatatgaacaagacctaatccacccatctcttgcaccattttaatcttgtcatagattgtgtaaccatcatc---tatgccatcacat |
477 |
Q |
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| T |
53431694 |
atcctggtcagtaatatgaacaagacctaatccacccatcccttgcaccgttttaattttgttattggttgagtaatcatcatcacttattccatcacaa |
53431793 |
T |
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| Q |
478 |
atgacaatctttcctttgactttgttcgtatctaatgaatttgggtgaca |
527 |
Q |
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| T |
53431794 |
atgacaatctttcctttgacttttttcttatttaatgaatttgggtgaca |
53431843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 270 - 528
Target Start/End: Complemental strand, 48374134 - 48373873
Alignment:
| Q |
270 |
taaaaaactttaaaatgcataccttgttgaattgacctattggaggattgtggcagcatcttttgttcttaccacggttgctgggaaat---cataattt |
366 |
Q |
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| T |
48374134 |
taaaaacctttaaaatgcttacctcgttgaattgacatatttgaggagtgtgacaacatcttttgatcttaccactgttgctgggaagtctgcataaata |
48374035 |
T |
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| Q |
367 |
cttgcctctcctccttcttggtcaataatatgaacaagacctaatccacccatctcttgcaccattttaatcttgtcatagattgtgtaaccatcatcta |
466 |
Q |
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| T |
48374034 |
tttgccacagctccatcctggtcagtaatatgaacaagacctaatccacccgcctcttgcaccgtcctaattttttcatcggttgaataatcaccatcta |
48373935 |
T |
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| Q |
467 |
tgccatcacatatgacaatctttcctttgactttgttcgtatctaatgaatttgggtgacac |
528 |
Q |
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| T |
48373934 |
ccccatcgcagatgacaatatttccttcaacttttttcttatctaatgaacttggatgacac |
48373873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 470 - 521
Target Start/End: Original strand, 26096526 - 26096577
Alignment:
| Q |
470 |
catcacatatgacaatctttcctttgactttgttcgtatctaatgaatttgg |
521 |
Q |
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| T |
26096526 |
catcacatatgacaatctttcctttgacttttttcttgtctaatgaacttgg |
26096577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 53308910 - 53308955
Alignment:
| Q |
274 |
aaactttaaaatgcataccttgttgaattgacctattggaggattg |
319 |
Q |
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| T |
53308910 |
aaactttataatgcttaccttgttgaattgacatattggagtattg |
53308955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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