View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1390-Insertion-30 (Length: 674)
Name: NF1390-Insertion-30
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390-Insertion-30 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 9 - 489
Target Start/End: Original strand, 1451702 - 1452182
Alignment:
| Q |
9 |
tttcaaattttgttgttggaattcattacacttcactttcactgagttttgatttggttgatcaatggtgaatgtgactttcttcctcttcttttcatca |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1451702 |
tttcaaattttgttgttggaattcattacacttcactttcactgagttttgatttggttgatcaatggtgaatgtgactttcttcctcttcttttcatca |
1451801 |
T |
|
| Q |
109 |
tcgcggtctttaaagaatgattttctcttctttaaaattctattttctctttgttggaatctttgacagttatgtcctccatgccatggaatcttacatt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1451802 |
tcgcggtctttaaagaatgattttctcttctttaaaattctattttctctttgttggaatctttgacagttatgtcctccatgccatggaatcttacatt |
1451901 |
T |
|
| Q |
209 |
gtgcgcagaataatttgtgacaagatggaaactcggcattggtcacaattttaatctcatcgttcaacaacgaaactgaacaattcttgaatggacagtt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1451902 |
gtgcgcagaataatttgtgacaagatggaaactcagcattggtcacaattttaatctcatcgttcaacaacgaaactgaacaattcttgaatggacagtt |
1452001 |
T |
|
| Q |
309 |
cccccatatatatttatgacccgataagagaatttctgtcttctttttcttttcttcaacatcatgcaatgaaaacaagtcctccactatagtaacaaag |
408 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||| | |
|
|
| T |
1452002 |
cccccatatatatttatcacccgataggagaatttctgtcttctttttcttttctgcaacatcatgcaatgaaaacaagtcttccactttagtaacaagg |
1452101 |
T |
|
| Q |
409 |
ttgttagctgcttgctctatggagtttaagaaactcatctctctaactacaaataaaaaatcaacaagggttgtatcatat |
489 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1452102 |
ttgttagctgcttgctttatggagtttaagaaactcatctctctaactacaaataaaaaatcaacaagggttgtatcatat |
1452182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 517 - 663
Target Start/End: Original strand, 1452280 - 1452427
Alignment:
| Q |
517 |
taaggtaactatagggttttgttgttgttcgaccaaaatacaataaatttagggttttgtattgtgacttgtaatttcatgcaatgtgctccgttcggtt |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1452280 |
taaggtaactatagggttttgttgttgttcgaccaaaatacaataaatttagggttttgtattgtgacttgtaatttcatgcaatgtgctccgttcggtt |
1452379 |
T |
|
| Q |
617 |
-ggttgaatggcgtcaggcagtgacagttacgtgccaaacgatcattt |
663 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1452380 |
aggttgaatggcgtcaggcagtgacagttacgttccaaacgatcattt |
1452427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 339 - 480
Target Start/End: Original strand, 1455767 - 1455909
Alignment:
| Q |
339 |
aatttctgtcttctttttcttttcttcaacatcatgcaatgaaaacaagtcctccactatagtaacaaagttgttagctgcttgctctatggagtttaag |
438 |
Q |
| |
|
|||||||| |||| || |||||||||| ||||||| | | ||||||||||||||| |||||| | ||||| |||||||||| |||||| ||| | |
|
|
| T |
1455767 |
aatttctgagttctcttccttttcttcatcatcatgtgaccataacaagtcctccacttgcgtaacatatttgtttgctgcttgctttatggatcttagg |
1455866 |
T |
|
| Q |
439 |
aaactcatctctctaactacaaat-aaaaaatcaacaagggtt |
480 |
Q |
| |
|
|| |||||||||| ||| |||||| ||||||||||||| |||| |
|
|
| T |
1455867 |
aacctcatctctccaaccacaaataaaaaaatcaacaacggtt |
1455909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 1455393 - 1455438
Alignment:
| Q |
16 |
ttttgttgttggaattcattacacttcactttcactgagttttgat |
61 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||| ||||||||| |
|
|
| T |
1455393 |
ttttgttgttgaaattcattgcaattcactttcactaagttttgat |
1455438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 8476 times since January 2019
Visitors: 7803