View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390-Insertion-32 (Length: 448)
Name: NF1390-Insertion-32
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390-Insertion-32 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 17 - 448
Target Start/End: Complemental strand, 9784666 - 9784233
Alignment:
| Q |
17 |
ctcaataattggaactgattctgctttttgtagatgtaaacttttgtaggataaatcagcttatattacacaaactgatacataaataagtgaaaatatg |
116 |
Q |
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| T |
9784666 |
ctcaataattggaacggattctgctttgtgtagatgtaaacttttgtaggataaatcagcttatattacacaaactgatacataaaaaagtgaaaatatg |
9784567 |
T |
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| Q |
117 |
agttttttcacaattatctccttcgtgcttcttggttgtcaatttcttaaagtgata--ctaaaagatctattattaccatgcctaataaaaatccctct |
214 |
Q |
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| T |
9784566 |
agttttttcagaaatatctccctcatgcttcttggttttcaatttcttaaagtgatatactacaagatctattattaccatgcctaataaaaatccctct |
9784467 |
T |
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| Q |
215 |
ttggacaataactttgtcttttaatatctcccttcccacaaattcttttagaatgtcaagacttgttgctagtaatttggtctatagattatgctcaata |
314 |
Q |
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| T |
9784466 |
ttggacaataactttgtcttttaatatctcccttcccacaaattcttttagaatgtcaagacttgttgctagcaatttggtctatagattatgctcaata |
9784367 |
T |
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| Q |
315 |
atctgtatggattatgctttgtccacaaatgaactttgtaagtttgaatgtattatacttgactagatcagtggtccacttgaatagtttaggaaagaat |
414 |
Q |
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| T |
9784366 |
atctgtatggattatgctttgtccacaaatgaactttgtaagtttgaatgtattatacttgactagatcagtggtcgacttaaatagtttaggaaagaat |
9784267 |
T |
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| Q |
415 |
gtcggcgttggtatacaggctagtgaattgttaa |
448 |
Q |
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| T |
9784266 |
gtcagcgttggtatacaggctagtgaattgttaa |
9784233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 30144179 - 30144087
Alignment:
| Q |
144 |
cttcttggttgtcaatttcttaaagtgatactaaaagatctattattaccatgcctaataaaaatccctctttggacaataactttgtctttt |
236 |
Q |
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| T |
30144179 |
cttcttggttttcaatttctttttgtgatactaaaagatctattattgacatgcctaataaaaatccctatttggacaataactttgtctttt |
30144087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 297
Target Start/End: Complemental strand, 30036223 - 30036169
Alignment:
| Q |
243 |
tcccttcccacaaattcttttagaatgtcaagacttgttgctagtaatttggtct |
297 |
Q |
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| T |
30036223 |
tcccttcccacaaattcttttagaatgcaaagacttgttgctggtaatttggtct |
30036169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 297
Target Start/End: Complemental strand, 30151959 - 30151905
Alignment:
| Q |
243 |
tcccttcccacaaattcttttagaatgtcaagacttgttgctagtaatttggtct |
297 |
Q |
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| T |
30151959 |
tcccttcccacaaattcttttagaatgcaaagacttgttgctggtaatttggtct |
30151905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 304 - 362
Target Start/End: Complemental strand, 30036126 - 30036068
Alignment:
| Q |
304 |
tatgctcaataatctgtatggattatgctttgtccacaaatgaactttgtaagtttgaa |
362 |
Q |
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| T |
30036126 |
tatgctcaataatttgtattgattatgctttgtctgcaaatgaactttgttagtttgaa |
30036068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 304 - 362
Target Start/End: Complemental strand, 30151862 - 30151804
Alignment:
| Q |
304 |
tatgctcaataatctgtatggattatgctttgtccacaaatgaactttgtaagtttgaa |
362 |
Q |
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| T |
30151862 |
tatgctcaataatttgtattgattatgctttgtctgcaaatgaactttgttagtttgaa |
30151804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 368
Target Start/End: Original strand, 34229151 - 34229216
Alignment:
| Q |
304 |
tatgctcaataatctgtatggattatgctttgtccacaaatg-aactttgtaagtttgaatgtatt |
368 |
Q |
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| T |
34229151 |
tatgctcaataatttgaatggattctggtctgtccagaaatgaaactttgttagtttgaatgtatt |
34229216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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