View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390-Insertion-33 (Length: 427)
Name: NF1390-Insertion-33
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390-Insertion-33 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 7 - 425
Target Start/End: Complemental strand, 38666731 - 38666327
Alignment:
| Q |
7 |
atatttcatatcatcatgtttgctagctagtaactaagcactccttgcattgatatgaactaacgttaacacaccgatttttattacaacttgcttcccg |
106 |
Q |
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| T |
38666731 |
atatttcatatcaacatgtttgctagctagtaactaagcacgccttgcattgatatgaacttacgttaacacaccgatttttattacaacttgcttcccg |
38666632 |
T |
|
| Q |
107 |
gtacccacatttaactttatgttcatttcatttcatttcaagagttgtatattgtcaaagaaattattaaaatggtatagtaataaaattgtacatgtgt |
206 |
Q |
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| T |
38666631 |
gtacccacatttaactttatgttcatttcatttcatttcaagagttgt----------------------aatggtatagtaataaaattgtacatgtgt |
38666554 |
T |
|
| Q |
207 |
gaaacatttactttatcttgtcgtgcatcacaatggatagaaaaagtagtatttgttttcnnnnnnnagatgtttttattcatgagaaataa-------- |
298 |
Q |
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| T |
38666553 |
gaaacatttactttatcttgtcgtgcatcacaatggatagaaaaagtagtatttgttttctttttttagatgtttttattcatgagaaataaagtatatt |
38666454 |
T |
|
| Q |
299 |
agtatattagggcagggacaaacatggtagtgggtagatgagaatcaagatgccctttggagtggcctagattccttctgcttccttttcatgttagctt |
398 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
38666453 |
agtatattagggcaggggcaaacatggtagtgggtagatgagaatcaagatgccctttggggtggcctagattccttctgcttccttttaatgttagctt |
38666354 |
T |
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| Q |
399 |
tgctatggacaaccttcgacaccccat |
425 |
Q |
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| T |
38666353 |
tgctatggacaaccttccacaccccat |
38666327 |
T |
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