View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390-Insertion-34 (Length: 356)
Name: NF1390-Insertion-34
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390-Insertion-34 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 7 - 335
Target Start/End: Original strand, 24098422 - 24098750
Alignment:
| Q |
7 |
agaatttgtagcttttccgttgatatttccaaacacatgttttgtgtttagagttgctttcaagacaggtatccgtgtgcagagttgctttcaagaagtg |
106 |
Q |
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| T |
24098422 |
agaatttgtagcttttccgttgatatttccaaacacatgttttgtgtttagagttgctttcaagacaggtacccgtgtgcagagttgctttcaagaagtg |
24098521 |
T |
|
| Q |
107 |
gcgtgatgaaataaagtggttagctaacccagttaaaaatgaatgatccgtaaaaacccaagttcaaaatattcaccaaaataatctctaacctaaccat |
206 |
Q |
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| T |
24098522 |
gcgtgatgaaataaagtggttagctaacccagttaaaaat-aatgatccgtaaaaacccaagttcaaaatattcactaaaataatctctaacctaaccat |
24098620 |
T |
|
| Q |
207 |
attatacttacctcccgggcaaaccttcgagattttaagaaaagaaaaagttcaaatgacttataatgtgaaagcaaagaacgat-gttaatatcctctt |
305 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
24098621 |
attatacttacctcccgggcaaaccttcgatattttaagaaaagaaaaagttcaaatgacttataatgtgaaagcaaagaccgatagttaatatcctctt |
24098720 |
T |
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| Q |
306 |
tttagcaaacaccttgaaactagataaaat |
335 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
24098721 |
tttagcaaacaccttgaaactagataaaat |
24098750 |
T |
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