View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390-Insertion-35 (Length: 522)
Name: NF1390-Insertion-35
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390-Insertion-35 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 8 - 522
Target Start/End: Complemental strand, 30995106 - 30994589
Alignment:
| Q |
8 |
cattgaccaacttattgacgaccttgttgctagccatggttgttgttgttcggacgagagacaataatgacggagcatgcttaaaaagtgggtagaatat |
107 |
Q |
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| T |
30995106 |
cattgaccaacttattgacgaccttgttgctagccatggttgttgttgttcggacgagagacaataatgatggagcatgcttaaaaagtgggtataatat |
30995007 |
T |
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| Q |
108 |
actttaatccnnnnnnnnnnnn---gcaagttaatcaccgcaaaacaaattcaaaggaaaaaagtgtaatgaatatacatacataccttgtgagaagtca |
204 |
Q |
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| T |
30995006 |
actttaatccaaaaaaaaaaaaaaagcaagttaatcaccgcaaaacaaattcaaagaaaaaaagtgtaatgaatatacatacataccttgtgagaagtca |
30994907 |
T |
|
| Q |
205 |
agaatgaaaatcggcgaatgagagtttctaaaaataggtgaaccctaaaaagacaataatcgggagtattcgaagagtttatttgagctgaatgaaattc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30994906 |
agaatgaaaatcggcgaatgagagtttctaaaaataggtgaaccctaaaaagacaataatcgggagtattcgaagagtttatttgagctgaatgaaattc |
30994807 |
T |
|
| Q |
305 |
taaagtcaatgtttgaacctccctctttatttctttgactttcactccttcttccctccaatctttattggatta---tatcatattacactaaaaactt |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30994806 |
taaagtcaatgtttgaacctccctctttatttctttgactttcattc---cttccctccaatctttattggattatagtatcatattacactaaaaactt |
30994710 |
T |
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| Q |
402 |
gtcgtctataaattcaatatacgagttggttgagatatgattcatctgtcttttaaacatcaatcattcgtaaaaagtattattctctttacgtataaca |
501 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30994709 |
gtcgtctataaattcaatatacgagttggttgagatatgattcatctgtcttttaaacatcaatcattcgtaaaaagtattattctctttacgtataaca |
30994610 |
T |
|
| Q |
502 |
tttgtattgcacaattccgca |
522 |
Q |
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||||||||||||||||||||| |
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| T |
30994609 |
tttgtattgcacaattccgca |
30994589 |
T |
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