View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390-Insertion-36 (Length: 722)
Name: NF1390-Insertion-36
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390-Insertion-36 |
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Alignment Details
Target: chr2 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 8 - 662
Target Start/End: Original strand, 36025035 - 36025702
Alignment:
| Q |
8 |
gaaaatgctaacaagagcataggttaaagaatcaaagatcgctgagatttgtaattgcttttgatctgacggtacaaaatccaaagtggtactatatcaa |
107 |
Q |
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| T |
36025035 |
gaaaatgctaacaagagcacaggttaaagaatcaaagatcgctgagatttgtaattgcttttgatctgacggtacaaaatccaaagtggttctatatcaa |
36025134 |
T |
|
| Q |
108 |
aaagacgtacgtggattgaaaaatatgtgacagagattgctgagattgacacacatggttcatatgcatgccgttggttaatgctaccaagtcgtgacta |
207 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36025135 |
aaagacgt----ggattgaaaaatatgtgacagagattgctgagattgacacacatggttcatatgcatgccgttggttaatcataccaagtcgtgacta |
36025230 |
T |
|
| Q |
208 |
aggaaaatgagacaagcctacacacatgtcataaaagggtgatttcccagcacgtttttcacacaatgaaacaattgtgtcttcagctgttcctaaatca |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36025231 |
aggaaaatgagacaagcctacacacatgtcataaaagggtgatttcccagcacgtttttcacacaatgaaacaattgtgtcttcagctgttcctaaagca |
36025330 |
T |
|
| Q |
308 |
ccacatggatagtaacaaatccaccaccaatattttgacagaaggttttcctagcctagaattg-----------------tttttggtggggattatct |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
36025331 |
ccacatggatagtaacaaatccaccaccaatattttgacagaaggttttcctagcctagaattgctttcatctttgttgttttgttggtggggattatct |
36025430 |
T |
|
| Q |
391 |
acctatgtattgtctacttcttgagtgacattttctttatctctaactttcttaattatctaaataatttattttaaccatcaatttatcgacaagtttc |
490 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36025431 |
acctatgtattgtctacttcttgagtgacattttctttatctctaactttcttaattatctaaataatttattttaatcatcaatttatcgacaagtttc |
36025530 |
T |
|
| Q |
491 |
tcaggtttacttccctatccttccgagtcttcgatcttaggcttctcaagctgcgttacagatgcacatgtcatcnnnnnnngccaagcttcatgtcatt |
590 |
Q |
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||||||||||||||||||| ||||| |||||||||||| ||||||||||| |||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
36025531 |
tcaggtttacttccctatctttccgggtcttcgatcttcggcttctcaagttgcgttacaggtgcacatgtcatctttttttgccaagcttcatgtcatt |
36025630 |
T |
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| Q |
591 |
ccccgaaggttgcgctaaagagttgaacttccaagttattatttgctacacagatttgctttagtgtgttca |
662 |
Q |
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|||| | |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
36025631 |
ccccaagggttgcgctaaagagttgaacttccaagttattatttgctgcatagatttgctttagtgtgttca |
36025702 |
T |
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