View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390-Insertion-39 (Length: 206)
Name: NF1390-Insertion-39
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390-Insertion-39 |
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Alignment Details
Target: chr2 (Bit Score: 128; Significance: 2e-66; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 3528849 - 3529004
Alignment:
| Q |
8 |
aagaagttagattatcatcgatgatgatggaaaggaggcgcaaggtgtgtgttacaggtggtgctggttatattggctctctccatgtcaagaagctttt |
107 |
Q |
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| T |
3528849 |
aagaagttagagtatcatcagtgatgatggaaaggaggtgcaaggtgtgtgttacaggtggtgctggttatattggttctctccttgtcaagaagctttt |
3528948 |
T |
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| Q |
108 |
ggaaaagggctacactgtccatgccactcttagaaacttaactattcattctctcc |
163 |
Q |
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| T |
3528949 |
ggaaaagggctacactgtccatgccactcttagaaacttaagtattcattctctcc |
3529004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 3546129 - 3546284
Alignment:
| Q |
8 |
aagaagttagattatcatcgatgatgatggaaaggaggcgcaaggtgtgtgttacaggtggtgctggttatattggctctctccatgtcaagaagctttt |
107 |
Q |
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| T |
3546129 |
aagaagttagagtatcatcagtgatgatggaaaggaggtgcaaggtgtgtgttacaggtggtgctggttatattggttctctccttgtcaagaagctttt |
3546228 |
T |
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| Q |
108 |
ggaaaagggctacactgtccatgccactcttagaaacttaactattcattctctcc |
163 |
Q |
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| T |
3546229 |
ggaaaagggctacactgtccatgccactcttagaaacttaagtattcattctctcc |
3546284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 3537204 - 3537318
Alignment:
| Q |
32 |
tgatggaaaggaggcgcaaggtgtgtgttacaggtggtgctggttatattggctctctccatgtcaagaagcttttggaaaagggctacactgtccatgc |
131 |
Q |
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| T |
3537204 |
tgatggaaaggaagtgtaaggtgtgtgtcactggtggtgctggttatattggctctctcttagtcaaaaagcttttagaaaagggatacaccgttcatgc |
3537303 |
T |
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| Q |
132 |
cactcttagaaactt |
146 |
Q |
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| T |
3537304 |
tactcttagaaactt |
3537318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 3529000 - 3529033
Alignment:
| Q |
173 |
tctccatatcttttttccattctttccactgtcc |
206 |
Q |
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| T |
3529000 |
tctccatatcttttttcctttctttccactgtcc |
3529033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 3546280 - 3546313
Alignment:
| Q |
173 |
tctccatatcttttttccattctttccactgtcc |
206 |
Q |
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| T |
3546280 |
tctccatatcttttttcctttctttccactgtcc |
3546313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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