View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390-Insertion-45 (Length: 86)
Name: NF1390-Insertion-45
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390-Insertion-45 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 75; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-35
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 44808216 - 44808294
Alignment:
| Q |
8 |
ttcaggttctccatctccttgttaaagtatttcaaaagcttccttcaccagattatctgagcatttgtcagtgtcttat |
86 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44808216 |
ttcaggttctccgtctccttgttaaagtatttcaaaagcttccttcaccagattatctgagcatttgtcagtgtcttat |
44808294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 9e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 9e-33
Query Start/End: Original strand, 8 - 86
Target Start/End: Original strand, 2231698 - 2231776
Alignment:
| Q |
8 |
ttcaggttctccatctccttgttaaagtatttcaaaagcttccttcaccagattatctgagcatttgtcagtgtcttat |
86 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2231698 |
ttcaggttctccgtctccttgttaaagtatttcaaaagcttccatcaccagattatctgagcatttgtcagtgtcttat |
2231776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 5e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 28134944 - 28134870
Alignment:
| Q |
8 |
ttcaggttctccatctccttgttaaagtatttcaaaagcttccttcaccagattatctgagcatttgtcagtgtc |
82 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28134944 |
ttcaggttctccgcctgcttgttaaagtatttcaaaagcttccttcaccagattatctgagcatttgtcagtgtc |
28134870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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