View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390-Insertion-50 (Length: 322)
Name: NF1390-Insertion-50
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390-Insertion-50 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 7 - 322
Target Start/End: Complemental strand, 38582177 - 38581862
Alignment:
| Q |
7 |
aggtggtgtatggttgcctgccactggtataccctttgatcttggattcactaaaggttgaaattaaatttcattaattattaccacaatgttgtatacg |
106 |
Q |
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| T |
38582177 |
aggtggtgtatggttgcctgccactggtataccctttgatcttggattcactaaaggttgaaattaaatttcattaattattaccacaatgttgtatacg |
38582078 |
T |
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| Q |
107 |
aaaagcaagtagaaattcctataggactaatacagattaattaagagaaataaataaggacattagacattaattgtgataccacaaaatgtggagagat |
206 |
Q |
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| T |
38582077 |
aaaagcaagtagaaattcctataggactaatacagattaattaagagaaataaataaggacattagacattaattgtgataccacaaaatgtggagagat |
38581978 |
T |
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| Q |
207 |
tgaaattctttgtaaactattgatactagagaaataaaagagtttacttgcgagttaacttgtttaattcaagagtttgacattttttcatgagatggac |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38581977 |
tgaaattctttgtaaactattgatactagagaaataaaagagtttacttgcgagataacttgtttaattcaagagtttgacattttttcatgagatggac |
38581878 |
T |
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| Q |
307 |
tcttttatcactatat |
322 |
Q |
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|||||||||||||||| |
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| T |
38581877 |
tcttttatcactatat |
38581862 |
T |
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