View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390_high_105 (Length: 317)

Name: NF1390_high_105
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390_high_105
NF1390_high_105
[»] chr8 (1 HSPs)
chr8 (30-150)||(18387610-18387730)
[»] chr3 (5 HSPs)
chr3 (30-151)||(5965473-5965594)
chr3 (29-151)||(11497911-11498033)
chr3 (30-151)||(2919179-2919291)
chr3 (30-149)||(5051544-5051660)
chr3 (90-146)||(7492660-7492716)
[»] scaffold0603 (1 HSPs)
scaffold0603 (30-163)||(5143-5276)
[»] chr1 (1 HSPs)
chr1 (30-151)||(17311399-17311520)
[»] scaffold1301 (1 HSPs)
scaffold1301 (32-151)||(15-140)
[»] chr5 (1 HSPs)
chr5 (30-151)||(16446445-16446566)
[»] chr4 (1 HSPs)
chr4 (30-151)||(5988105-5988232)


Alignment Details
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 18387730 - 18387610
Alignment:
Q  30 gttttaccaatccctgccatacccacaattgaaataactcttgttttacaatcatcaccatcactagacaataaaagatgtttaagtttctttatatcac 129  Q
    ||||||||||||||||||||||||||||| ||||||  ||||||||||| ||||||||  ||| || |||||||||||||||||||||| |||||||||     
T  18387730 gttttaccaatccctgccatacccacaatggaaatagttcttgttttactatcatcactgtcattatacaataaaagatgtttaagtttgtttatatcat 18387631  T
Q  130 tatctcttccataaatagaag 150  Q
    | |||||||||||||||||||    
T  18387630 tgtctcttccataaatagaag 18387610  T

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Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 5965594 - 5965473
Alignment:
Q  30 gttttaccaatccctgccatacccacaattgaaataactcttgttttacaatcatcaccatcactagacaataaaagatgtttaagtttctttatatcac 129  Q
    ||||||||||||||| | ||||||||||| ||||||| || | |||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||     
T  5965594 gttttaccaatcccttcaatacccacaatggaaataattcctattttaccatcatcaccgtcactagacaacaaaagatgtttaagtttctttatatcat 5965495  T
Q  130 tatctcttccataaatagaaga 151  Q
    | ||||||||||||||| ||||    
T  5965494 tgtctcttccataaatacaaga 5965473  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 29 - 151
Target Start/End: Original strand, 11497911 - 11498033
Alignment:
Q  29 agttttaccaatccctgccatacccacaattgaaataactcttgttttacaatcatcaccatcactagacaataaaagatgtttaagtttctttatatca 128  Q
    |||||||||||||||| | |||||||| |||||||||| || | ||| || |||||||| |||||||||||| ||||||||||||||||||| | |||||    
T  11497911 agttttaccaatcccttcaatacccacgattgaaataattcgtatttgactatcatcacaatcactagacaacaaaagatgtttaagtttctctttatca 11498010  T
Q  129 ctatctcttccataaatagaaga 151  Q
    || ||||||||||||||||||||    
T  11498011 ctgtctcttccataaatagaaga 11498033  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 2919291 - 2919179
Alignment:
Q  30 gttttaccaatccctgccatacccacaattgaaataactcttgttttacaatcatcaccatcactagacaataaaagatgtttaagtttctttatatcac 129  Q
    |||||||||||||||||||||||| |||| ||||||| |||| |||         ||| |||||||||||| ||||||||||||||||| ||| ||||||    
T  2919291 gttttaccaatccctgccatacccgcaatcgaaataattcttattt---------cactatcactagacaacaaaagatgtttaagtttgtttttatcac 2919201  T
Q  130 tatctcttccataaatagaaga 151  Q
    ||||||| ||||||||| ||||    
T  2919200 tatctctaccataaatacaaga 2919179  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 149
Target Start/End: Complemental strand, 5051660 - 5051544
Alignment:
Q  30 gttttaccaatccctgccatacccacaattgaaataactcttgttttacaatcatcaccatcactagacaataaaagatgtttaagtttctttatatcac 129  Q
    ||||||||||||||| |||| ||||| || ||||||| |||| ||| |   ||||| |||||| |||| ||||||||||||||||||||||||| ||||     
T  5051660 gttttaccaatccctaccattcccacgatggaaataattcttatttga---tcatctccatcattagaaaataaaagatgtttaagtttctttacatcat 5051564  T
Q  130 tatctcttccataaatagaa 149  Q
    | | ||||| ||||||||||    
T  5051563 tgtttcttctataaatagaa 5051544  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 7492660 - 7492716
Alignment:
Q  90 tcactagacaataaaagatgtttaagtttctttatatcactatctcttccataaata 146  Q
    ||||||||||| ||| ||| ||||||||||||||||||||| |||||||||||||||    
T  7492660 tcactagacaacaaaggatttttaagtttctttatatcactgtctcttccataaata 7492716  T

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Target: scaffold0603 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 30 - 163
Target Start/End: Original strand, 5143 - 5276
Alignment:
Q  30 gttttaccaatccctgccatacccacaattgaaataactcttgttttacaatcatcaccatcactagacaataaaagatgtttaagtttctttatatcac 129  Q
    |||||||| |||||||| ||||| ||||| ||||| | || | |||||| ||||||||||||   ||||||||||||||||||||||| ||| ||||||     
T  5143 gttttaccgatccctgctataccaacaatggaaatgattcgtattttactatcatcaccatcttcagacaataaaagatgtttaagttccttaatatcat 5242  T
Q  130 tatctcttccataaatagaagaagattcatcatc 163  Q
    | ||||||||||||||||||||||||||| ||||    
T  5243 tgtctcttccataaatagaagaagattcaccatc 5276  T

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Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 17311520 - 17311399
Alignment:
Q  30 gttttaccaatccctgccatacccacaattgaaataactcttgttttacaatcatcaccatcactagacaataaaagatgtttaagtttctttatatcac 129  Q
    ||||||||||||||| ||||||||||||| |||||||||||| ||| || |||||||  ||||||| |||| |||||||| |||||||| || ||||||     
T  17311520 gttttaccaatccctcccatacccacaatggaaataactcttatttgactatcatcaaaatcactaaacaacaaaagatggttaagtttgttcatatcat 17311421  T
Q  130 tatctcttccataaatagaaga 151  Q
    | ||||||||||||||| ||||    
T  17311420 tctctcttccataaatacaaga 17311399  T

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Target: scaffold1301 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 32 - 151
Target Start/End: Original strand, 15 - 140
Alignment:
Q  32 tttaccaatccctgccatacccacaattgaaataactcttgttttacaatcat------caccatcactagacaataaaagatgtttaagtttctttata 125  Q
    ||||||||||||||||||||| |||||  ||||||||||| |||||| |||||      |||| ||| ||||||||||||||||||||||||| ||||||    
T  15 tttaccaatccctgccataccgacaatgaaaataactcttattttactatcatattcatcaccgtcattagacaataaaagatgtttaagtttgtttata 114  T
Q  126 tcactatctcttccataaatagaaga 151  Q
    ||| | ||||||||||||||| ||||    
T  115 tcattgtctcttccataaatacaaga 140  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 16446566 - 16446445
Alignment:
Q  30 gttttaccaatccctgccatacccacaattgaaataactcttgttttacaatcatcaccatcactagacaataaaagatgtttaagtttctttatatcac 129  Q
    ||||||||||||||| ||||||||||||| ||||||| || |  ||||| || ||||  | || |||| |||||||||||||||||||||||| |||||     
T  16446566 gttttaccaatccctcccatacccacaatggaaataattcctactttactattatcaaaaccagtagataataaaagatgtttaagtttctttctatcat 16446467  T
Q  130 tatctcttccataaatagaaga 151  Q
     |||||||||||||||||||||    
T  16446466 catctcttccataaatagaaga 16446445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 5988232 - 5988105
Alignment:
Q  30 gttttaccaatccctgccatacccacaattgaaataactcttgttttacaatcatcaccatcactag---------acaataaaagatgtttaagtttct 120  Q
    |||||||||| |||| ||||||||||||| ||||||| ||||  ||||||||||   ||||||||||         |||  ||||||| |||||||||||    
T  5988232 gttttaccaacccctcccatacccacaatggaaataattcttactttacaatca---ccatcactagcatcttctgacagcaaaagatttttaagtttct 5988136  T
Q  121 ttatatcactatctcttccataaatagaaga 151  Q
    |||||||| | ||||||||||||||||||||    
T  5988135 ttatatcattgtctcttccataaatagaaga 5988105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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