View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_high_109 (Length: 304)
Name: NF1390_high_109
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_109 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 255
Target Start/End: Complemental strand, 8839493 - 8839245
Alignment:
| Q |
7 |
agcttgtggcttgcctagcattttcatgttatgagcattgagcactaccttggtagtgcccctagaaaatagttgtcgtgcctaaggcgtttcttttaga |
106 |
Q |
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| T |
8839493 |
agcttgtggcttgcctagcattttcatgttatgagcattgagcactaccttggtagtgcccctaggaaatagttgtcgtgcttaaggtgtttcttttaaa |
8839394 |
T |
|
| Q |
107 |
ttaaattaataattgtaaaaagaaaaatagttatttagtcggagttttaaatcataaatggtctcacttgtagttgagaaaaattcagctacattgactt |
206 |
Q |
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|||||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
8839393 |
ttaaattaataattttaaaaagaaaattagttatttagttggagttttaaatcataaatggtctcacttatagttgagaaaaattcagctacattgactt |
8839294 |
T |
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| Q |
207 |
taactatcttcaatttgactcgtaatatttctgttatactaatgcgttt |
255 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
8839293 |
taactatcttcaatttgactcgtaatatttctcttatactaaagcgttt |
8839245 |
T |
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