View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_high_114 (Length: 286)
Name: NF1390_high_114
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1390_high_114 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 32210023 - 32210299
Alignment:
Q |
1 |
gttaaatcataacataataacatcaaagaagatggaccatctatagtctgtattgtagtgtatnnnnnnnnnnnnnnnntgaacaaccaaacgtgttgan |
100 |
Q |
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T |
32210023 |
gttaaatcataacataataacatcaaagaagatggaccatctatagtctgtattgtagtgtataaaaaataaaataaaatgaacaaccaaacgtgttgat |
32210122 |
T |
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Q |
101 |
nnnnnngtatttgtatgttggttgctaataaagacatatttctaaagacagttataccagacacattttcttatgcctatttaattacagatagatccaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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T |
32210123 |
ttttttgtatttgtatgttggttgctaataaagacatatttctaaagacagttataccagacacattttcttatgcctatttaattacagatagatccaa |
32210222 |
T |
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Q |
201 |
taaaatattaaacaagacggtggataaggtatttttatttttgatgtcactatgactaaataaatattaagtataat |
277 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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T |
32210223 |
taaaatattaaacaagacggtggataaggtatttttatttttgatgtcactatgactaaataaatatcaagtataat |
32210299 |
T |
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