View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_high_115 (Length: 283)
Name: NF1390_high_115
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_115 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 115 - 272
Target Start/End: Complemental strand, 11639543 - 11639386
Alignment:
| Q |
115 |
gtcttgtctcatatttgtcttccagtaactattactgctttagagttttgggttttgacctttacagtctttgattttctttttatgaggtaaattgcat |
214 |
Q |
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| T |
11639543 |
gtcttgtctcatatttgtcttccagtaactagtactgctttagagttttgggttttgacctttacagtctttgattttctttttatgaggtaaattgcat |
11639444 |
T |
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| Q |
215 |
gttgatctagcattcttgtgtcatatgccatatagcatatctcattattttctttcat |
272 |
Q |
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| T |
11639443 |
gttgatctagcattcttgtgtcatatgccatatagcatatctcattattttctttcat |
11639386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 11639610 - 11639572
Alignment:
| Q |
29 |
aattgtcaactaccattatattaccatagtatatgactt |
67 |
Q |
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| T |
11639610 |
aattgtcaactaccattatattaccatagtatatgactt |
11639572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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