View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1390_high_124 (Length: 265)
Name: NF1390_high_124
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_124 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 57 - 176
Target Start/End: Complemental strand, 12096842 - 12096724
Alignment:
| Q |
57 |
cactttcctccttatcttttcctttatattttgatttgtatcaagtaataaacaccgacattcaatcacatttaactgcatgatttatgcaatgtacttg |
156 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12096842 |
cactttcctccttatcttttcctttac-ttttgatttgtatcccgttataaacaccgacattcaatcacatttaacaacatgatttatgcaatgtacttg |
12096744 |
T |
|
| Q |
157 |
tgtaactcgttttccaattg |
176 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
12096743 |
tgtaactcgttttccaattg |
12096724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 155
Target Start/End: Complemental strand, 12080166 - 12080074
Alignment:
| Q |
63 |
cctccttatcttttcctttatattttgatttgtatcaagtaataaacaccgacattcaatcacatttaactgcatgatttatgcaatgtactt |
155 |
Q |
| |
|
||||||||||||||||| || |||| ||||| |||||| ||||||| |||||||||| ||| |||||| ||||||| |||||| |||||| |
|
|
| T |
12080166 |
cctccttatcttttcctctacatttgaatttgcatcaagatttaaacactgacattcaattacagttaactacatgattcatgcaaggtactt |
12080074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 12903 times since January 2019
Visitors: 8269