View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_high_129 (Length: 257)
Name: NF1390_high_129
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_129 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 42223087 - 42223310
Alignment:
| Q |
30 |
gaaatggttccattttcctttccattcttttcacttgattgatattcaatttgttggttattattctctgtgtaaggggctttttggaatgtaaattttt |
129 |
Q |
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| T |
42223087 |
gaaatgtttccattttcctttccattcttttcacttga----tattcaatttgttggttattattctctgtgtaaggggctttttggaatgtaaattttt |
42223182 |
T |
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| Q |
130 |
tcccacccacctcaacatcaaagtcgtgaataacgtattctataacataatgtgctcctgaagactgttacttggtaaataacaattaatatggtgaaat |
229 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42223183 |
tcccacccatctcaacatcaaagtcgtgaataacgtattctataacataatgtgctcctgaagactgttacttggtaaataacaattaatatggtgaaat |
42223282 |
T |
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| Q |
230 |
gaaattgactaagaagatatttataaat |
257 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
42223283 |
gaaattgactaagaagatatttataaat |
42223310 |
T |
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