View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_high_133 (Length: 252)
Name: NF1390_high_133
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_133 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 41 - 252
Target Start/End: Complemental strand, 2813746 - 2813530
Alignment:
| Q |
41 |
agatattgagatttgaagagcttcatctttagctcaatggtattaaaaaccgcaccactct-----ctatatattcaccaatccatatggaaaaagctat |
135 |
Q |
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| T |
2813746 |
agatattgagatttgaagagcttcatctttagctcaatggtattaaaaaccacaccactctactctctatatattcaccaatccatatggaaaaagttat |
2813647 |
T |
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| Q |
136 |
caaaattttcggatccattcatccgaatataagaaaaaacaatattttctcaatgtcaatccattcaggagatactctcatagcacttggagttggatat |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2813646 |
caaaattttcggatccattcatccgaatataagaaaaaacaatattttctcaatgtcaatccattcaggagatactctcatagcacttggagttggatat |
2813547 |
T |
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| Q |
236 |
gaagttttagagctact |
252 |
Q |
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||||||||||||||||| |
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| T |
2813546 |
gaagttttagagctact |
2813530 |
T |
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