View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1390_high_139 (Length: 251)
Name: NF1390_high_139
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF1390_high_139 |
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[»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 14214362 - 14214122
Alignment:
Q |
1 |
gctggttttggagctaataagtgtcagaaagcttttgaaaacccagaggaaaagaatgttcgtgctgcagtccatcttcgaaacaatgagatgtattttc |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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T |
14214362 |
gctggttttggagctaataagtgtcagaaagcttttgaaaacccagaggaaaagaatgttcgtgctgcagtccatcttcgaaacaatgaaatgtattttc |
14214263 |
T |
|
Q |
101 |
tatgtgtaattgcatctttatctataattcatcttatgtagtggaggcttacgaagtcaaccattgacaattgttggtttaataaatgattagattcgtt |
200 |
Q |
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|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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|
T |
14214262 |
tatgtgtaattgcatctttatctatatttcatcttatgtagtggaggcttacgaagtcaaccattgacaattgttggtctaataaatgatttcattcgtt |
14214163 |
T |
|
Q |
201 |
tcaaaatacatgtcgcaattttacaatgtgcactattcatc |
241 |
Q |
|
|
| ||||||||||||||||||||| |||||||| |||||||| |
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|
T |
14214162 |
ttaaaatacatgtcgcaattttataatgtgcattattcatc |
14214122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 14172871 - 14172698
Alignment:
Q |
1 |
gctggttttggagctaataagtgtcagaaagcttttgaaaacccagaggaaaagaatgttcgtgctgcagtccatcttcgaaacaatgagatgtattttc |
100 |
Q |
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|
|||||||||||||||||||| ||| ||| |||||||||||| ||| |||||||| |||| ||||||||| ||||||||||||||||||| |||||||||| |
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T |
14172871 |
gctggttttggagctaataattgtgagacagcttttgaaaaaccacaggaaaagtatgtgcgtgctgcaatccatcttcgaaacaatgaaatgtattttc |
14172772 |
T |
|
Q |
101 |
tatgtgtaattgcatctttatctataattcatcttatgtagtggaggcttacgaagtcaaccattgacaattgt |
174 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||| |
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|
T |
14172771 |
tatgtgtaattgcatctttatctataattcatcttatgtagtgtaggcttatgaaatcaaccattgacaattgt |
14172698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 14177407 - 14177234
Alignment:
Q |
1 |
gctggttttggagctaataagtgtcagaaagcttttgaaaacccagaggaaaagaatgttcgtgctgcagtccatcttcgaaacaatgagatgtattttc |
100 |
Q |
|
|
|||||||||||||||||||| ||| ||| |||||||||||| ||| |||||||| |||| ||||||||| ||||||||||||||||||| |||||||||| |
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|
T |
14177407 |
gctggttttggagctaataattgtgagacagcttttgaaaaaccacaggaaaagtatgtgcgtgctgcaatccatcttcgaaacaatgaaatgtattttc |
14177308 |
T |
|
Q |
101 |
tatgtgtaattgcatctttatctataattcatcttatgtagtggaggcttacgaagtcaaccattgacaattgt |
174 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||| |
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|
T |
14177307 |
tatgtgtaattgcatctttatctataattcatcttatgtagtgtaggcttatgaaatcaaccattgacaattgt |
14177234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 14166040 - 14165867
Alignment:
Q |
1 |
gctggttttggagctaataagtgtcagaaagcttttgaaaacccagaggaaaagaatgttcgtgctgcagtccatcttcgaaacaatgagatgtattttc |
100 |
Q |
|
|
|||||||||||||||||||| |||||||||| ||||||||| |||||||||||||| |||| |||| || |||||||||||||||||||||| ||||||| |
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T |
14166040 |
gctggttttggagctaataattgtcagaaaggttttgaaaaaccagaggaaaagaaggttcttgctacaatccatcttcgaaacaatgagatctattttc |
14165941 |
T |
|
Q |
101 |
tatgtgtaattgcatctttatctataattcatcttatgtagtggaggcttacgaagtcaaccattgacaattgt |
174 |
Q |
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|
| |||||||||| || |||||||||||||||||||| |||| ||| | || || | |||||||||||||||| |
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|
T |
14165940 |
ttggtgtaattgcttcattatctataattcatcttatttagttgagacatataaaataaaccattgacaattgt |
14165867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 238
Target Start/End: Original strand, 31869717 - 31869758
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattc |
238 |
Q |
|
|
|||||||||||||||||||| |||||||||||| |||||||| |
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|
T |
31869717 |
cgtttcaaaatacatgtcgcgattttacaatgtacactattc |
31869758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 10298910 - 10298868
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
||||||||||||||| ||||||||||| |||||||| |||||| |
|
|
T |
10298910 |
cgtttcaaaatacatatcgcaattttataatgtgcattattca |
10298868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 29790216 - 29790257
Alignment:
Q |
198 |
gtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
||||||||||||||||||||||||| |||||| |||||||| |
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|
T |
29790216 |
gtttcaaaatacatgtcgcaattttgcaatgtatactattca |
29790257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 13506244 - 13506300
Alignment:
Q |
78 |
tcgaaacaatgagatgtattttctatgtgtaattgcatctttatctataattcatct |
134 |
Q |
|
|
||||||||||||||| | |||| || |||||| || |||||||||||||||||||| |
|
|
T |
13506244 |
tcgaaacaatgagatcttttttgtaaatgtaatggcttctttatctataattcatct |
13506300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 13528887 - 13528943
Alignment:
Q |
78 |
tcgaaacaatgagatgtattttctatgtgtaattgcatctttatctataattcatct |
134 |
Q |
|
|
||||||||||||||| | |||| || |||||| || |||||||||||||||||||| |
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|
T |
13528887 |
tcgaaacaatgagatcttttttgtaaatgtaatagcttctttatctataattcatct |
13528943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 28477764 - 28477804
Alignment:
Q |
199 |
tttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
|||||||||||||||| ||||||| ||||||| |||||||| |
|
|
T |
28477764 |
tttcaaaatacatgtcacaattttgcaatgtgtactattca |
28477804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 239
Target Start/End: Original strand, 29693894 - 29693934
Alignment:
Q |
199 |
tttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
|||||||||||||||| ||||||| ||||||| |||||||| |
|
|
T |
29693894 |
tttcaaaatacatgtcacaattttgcaatgtgtactattca |
29693934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 35570307 - 35570265
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
35570307 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
35570265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 36341626 - 36341671
Alignment:
Q |
194 |
attcgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
|||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
T |
36341626 |
attcgtttcaaaatacatgtcgcatttttgcaatgtgcactattca |
36341671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 6766803 - 6766761
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
||||||||||||||||||||||||||||||| |||| |||||| |
|
|
T |
6766803 |
cgtttcaaaatacatgtcgcaattttacaatctgcattattca |
6766761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 4131756 - 4131714
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
|||||||||||| |||||||||||||||||||| |||||||| |
|
|
T |
4131756 |
cgtttcaaaatatatgtcgcaattttacaatgtatactattca |
4131714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 8656083 - 8656125
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
||||| ||||||||| |||||||||||||||||||||||||| |
|
|
T |
8656083 |
cgttttaaaatacataccgcaattttacaatgtgcactattca |
8656125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 25566800 - 25566758
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
|||||||||||||||||| | ||||||||||||||||||||| |
|
|
T |
25566800 |
cgtttcaaaatacatgtccaatttttacaatgtgcactattca |
25566758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 27045661 - 27045619
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
||||||||||||||||| ||||||||||||||| |||||||| |
|
|
T |
27045661 |
cgtttcaaaatacatgttgcaattttacaatgtatactattca |
27045619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 42662196 - 42662238
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
|||||||||||||||||||||||||| ||||||| | |||||| |
|
|
T |
42662196 |
cgtttcaaaatacatgtcgcaattttgcaatgtgtattattca |
42662238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 24424664 - 24424623
Alignment:
Q |
198 |
gtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
||||||||||||||||| ||||||||| |||| ||||||||| |
|
|
T |
24424664 |
gtttcaaaatacatgtcacaattttactatgttcactattca |
24424623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 49102068 - 49102023
Alignment:
Q |
195 |
ttcgtttcaaaatacatgtcgcaattttacaatgtgcactattcat |
240 |
Q |
|
|
|||| |||||||||||||| |||||||||||| |||||||||||| |
|
|
T |
49102068 |
ttcgcttcaaaatacatgttacaattttacaatatgcactattcat |
49102023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 5529020 - 5529060
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactatt |
237 |
Q |
|
|
|||||||||||||||||| ||||||||||||| ||||||| |
|
|
T |
5529020 |
cgtttcaaaatacatgtcctaattttacaatgtacactatt |
5529060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 9632162 - 9632206
Alignment:
Q |
195 |
ttcgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
|||||||||||||||||||||||||||||||||||| |||||||| |
|
|
T |
9632162 |
ttcgtttcaaaatacatgtcgcaattttacaatgtgtactattca |
9632206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 40204973 - 40204931
Alignment:
Q |
199 |
tttcaaaatacatgtcgcaattttacaatgtgcactattcatc |
241 |
Q |
|
|
|||| |||||||||||| ||||||| ||||||||||||||||| |
|
|
T |
40204973 |
tttctaaatacatgtcgtaattttaaaatgtgcactattcatc |
40204931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 30191721 - 30191679
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
||||||||||||||||| ||||||||||||||||||||||||| |
|
|
T |
30191721 |
cgtttcaaaatacatgttgcaattttacaatgtgcactattca |
30191679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 19897646 - 19897690
Alignment:
Q |
195 |
ttcgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
T |
19897646 |
ttcgtttcaaaatacttgtcgcaattttacaatgtacactattca |
19897690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 35381147 - 35381104
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattcat |
240 |
Q |
|
|
|||||||||||||||||| | |||||||||||||||||||||| |
|
|
T |
35381147 |
cgtttcaaaatacatgtccaatttttacaatgtgcactattcat |
35381104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 2760980 - 2760938
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
|||||||||||||||||| | ||||||||||||||||||||| |
|
|
T |
2760980 |
cgtttcaaaatacatgtccaatttttacaatgtgcactattca |
2760938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 5428587 - 5428629
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
||||||||||||||||||||| ||| |||||||||||||||| |
|
|
T |
5428587 |
cgtttcaaaatacatgtcgcattttggcaatgtgcactattca |
5428629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 12240430 - 12240388
Alignment:
Q |
198 |
gtttcaaaatacatgtcgcaattttacaatgtgcactattcat |
240 |
Q |
|
|
||||||||||||||||| | |||||||||||||||||||||| |
|
|
T |
12240430 |
gtttcaaaatacatgtccaatttttacaatgtgcactattcat |
12240388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 20875499 - 20875457
Alignment:
Q |
198 |
gtttcaaaatacatgtcgcaattttacaatgtgcactattcat |
240 |
Q |
|
|
|||||||||||||||| | ||||||| |||||||||||||||| |
|
|
T |
20875499 |
gtttcaaaatacatgttgtaattttaaaatgtgcactattcat |
20875457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 23360184 - 23360230
Alignment:
Q |
194 |
attcgtttcaaaatacatgtcgcaattttacaatgtgcactattcat |
240 |
Q |
|
|
|||| ||||||||||||||||||| |||| |||| |||||||||||| |
|
|
T |
23360184 |
attcatttcaaaatacatgtcgcatttttgcaatatgcactattcat |
23360230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 3036990 - 3037031
Alignment:
Q |
198 |
gtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
|||||||||||||||||| |||| ||||||||| |||||||| |
|
|
T |
3036990 |
gtttcaaaatacatgtcgtaattatacaatgtgtactattca |
3037031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 198 - 240
Target Start/End: Complemental strand, 41253015 - 41252973
Alignment:
Q |
198 |
gtttcaaaatacatgtcgcaattttacaatgtgcactattcat |
240 |
Q |
|
|
||||||||||| ||||||||||||||||||||||||||||||| |
|
|
T |
41253015 |
gtttcaaaatatatgtcgcaattttacaatgtgcactattcat |
41252973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 15333058 - 15333017
Alignment:
Q |
198 |
gtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
|||| ||||||||||||||||||||||||||||||||||||| |
|
|
T |
15333058 |
gttttaaaatacatgtcgcaattttacaatgtgcactattca |
15333017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 3430521 - 3430487
Alignment:
Q |
203 |
aaaatacatgtcgcaattttacaatgtgcactatt |
237 |
Q |
|
|
||||||||||| ||||||||||||||||||||||| |
|
|
T |
3430521 |
aaaatacatgttgcaattttacaatgtgcactatt |
3430487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 22782275 - 22782317
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
||||||||| |||||||||||||||| ||||||||||||||| |
|
|
T |
22782275 |
cgtttcaaactacatgtcgcaattttttaatgtgcactattca |
22782317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 22786639 - 22786681
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
||||||||| |||||||||||||||| ||||||||||||||| |
|
|
T |
22786639 |
cgtttcaaactacatgtcgcaattttttaatgtgcactattca |
22786681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 232
Target Start/End: Complemental strand, 27813853 - 27813819
Alignment:
Q |
198 |
gtttcaaaatacatgtcgcaattttacaatgtgca |
232 |
Q |
|
|
|||||||||||||||| |||||||||||||||||| |
|
|
T |
27813853 |
gtttcaaaatacatgttgcaattttacaatgtgca |
27813819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 32273719 - 32273761
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
||||||||||||||||||| ||||| |||||||||| |||||| |
|
|
T |
32273719 |
cgtttcaaaatacatgtcgtaatttcacaatgtgcattattca |
32273761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 42761736 - 42761694
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
|||||||||||||||||| | ||||||||||||||||||||| |
|
|
T |
42761736 |
cgtttcaaaatacatgtccaatttttacaatgtgcactattca |
42761694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 44561791 - 44561835
Alignment:
Q |
195 |
ttcgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
||||||||||||||||||| ||| ||| |||||||||||||||| |
|
|
T |
44561791 |
ttcgtttcaaaatacatgttgcatgtttgcaatgtgcactattca |
44561835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 15382679 - 15382637
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
||||||||||||||||||||||||||||||||| ||||||||| |
|
|
T |
15382679 |
cgtttcaaaatacatgtcgcaattttacaatgtacactattca |
15382637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 44451541 - 44451499
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
||||||||||||||||| |||||||||| |||||||||||||| |
|
|
T |
44451541 |
cgtttcaaaatacatgttgcaattttactatgtgcactattca |
44451499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 239
Target Start/End: Complemental strand, 30385392 - 30385356
Alignment:
Q |
203 |
aaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
||||||||||||||||||||| ||||||||||||||| |
|
|
T |
30385392 |
aaaatacatgtcgcaattttataatgtgcactattca |
30385356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 38153528 - 38153488
Alignment:
Q |
199 |
tttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
||||||||||||||||||| ||||| ||||||||||||||| |
|
|
T |
38153528 |
tttcaaaatacatgtcgcatttttataatgtgcactattca |
38153488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 40772025 - 40771983
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
|||||||||||||||||| | ||||||||||||||||||||| |
|
|
T |
40772025 |
cgtttcaaaatacatgtccaatttttacaatgtgcactattca |
40771983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 3485459 - 3485419
Alignment:
Q |
198 |
gtttcaaaatacatgtcgcaattttacaatgtgcactattc |
238 |
Q |
|
|
|||| ||||||||||||| ||||||||||| |||||||||| |
|
|
T |
3485459 |
gttttaaaatacatgtcgtaattttacaatatgcactattc |
3485419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 9007035 - 9006994
Alignment:
Q |
199 |
tttcaaaatacatgtcgcaattttacaatgtgcactattcat |
240 |
Q |
|
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
T |
9007035 |
tttcaaaatacatgtcgcaattttacaatgtgcattattcat |
9006994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 43444791 - 43444751
Alignment:
Q |
199 |
tttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
|||||||||||||||||||||||||||||||||| |||||| |
|
|
T |
43444791 |
tttcaaaatacatgtcgcaattttacaatgtgcattattca |
43444751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 239
Target Start/End: Original strand, 7799856 - 7799898
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
||||||||||||||||||||| |||| |||||||||||||||| |
|
|
T |
7799856 |
cgtttcaaaatacatgtcgcatttttgcaatgtgcactattca |
7799898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 198 - 240
Target Start/End: Original strand, 11931701 - 11931743
Alignment:
Q |
198 |
gtttcaaaatacatgtcgcaattttacaatgtgcactattcat |
240 |
Q |
|
|
|||||||||||||||||||||||||||||| |||| ||||||| |
|
|
T |
11931701 |
gtttcaaaatacatgtcgcaattttacaatatgcattattcat |
11931743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 42133763 - 42133804
Alignment:
Q |
199 |
tttcaaaatacatgtcgcaattttacaatgtgcactattcat |
240 |
Q |
|
|
||||||||||||||||| ||||||| |||||||||||||||| |
|
|
T |
42133763 |
tttcaaaatacatgtcgtaattttaaaatgtgcactattcat |
42133804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 33607387 - 33607428
Alignment:
Q |
199 |
tttcaaaatacatgtcgcaattttacaatgtgcactattcat |
240 |
Q |
|
|
|||||||||||||||| | |||||||||||||||||||||| |
|
|
T |
33607387 |
tttcaaaatacatgtccaatttttacaatgtgcactattcat |
33607428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 24916501 - 24916459
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
|||||||||||||||||| ||||||||||||||| |||||||| |
|
|
T |
24916501 |
cgtttcaaaatacatgtcacaattttacaatgtgtactattca |
24916459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 10696799 - 10696842
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattcat |
240 |
Q |
|
|
|||||||||||||| ||||| ||||| ||||||||||||||||| |
|
|
T |
10696799 |
cgtttcaaaatacacgtcgctattttgcaatgtgcactattcat |
10696842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 24992391 - 24992349
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattca |
239 |
Q |
|
|
|||||||||||||||||| | ||||||||||||||||||||| |
|
|
T |
24992391 |
cgtttcaaaatacatgtcatagttttacaatgtgcactattca |
24992349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 7750133 - 7750096
Alignment:
Q |
203 |
aaaatacatgtcgcaattttacaatgtgcactattcat |
240 |
Q |
|
|
|||||||| |||| |||||||||||||||||||||||| |
|
|
T |
7750133 |
aaaatacacgtcgtaattttacaatgtgcactattcat |
7750096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 12007885 - 12007845
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactatt |
237 |
Q |
|
|
||||||||||||||||||||| ||||| | ||||||||||| |
|
|
T |
12007885 |
cgtttcaaaatacatgtcgcatttttatattgtgcactatt |
12007845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 217129 - 217088
Alignment:
Q |
197 |
cgtttcaaaatacatgtcgcaattttacaatgtgcactattc |
238 |
Q |
|
|
|||||||||||||| ||||||||||||||||||||| ||||| |
|
|
T |
217129 |
cgtttcaaaatacaagtcgcaattttacaatgtgcaatattc |
217088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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