View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_high_141 (Length: 251)
Name: NF1390_high_141
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_141 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 33273893 - 33273651
Alignment:
| Q |
1 |
atggcgaagaatgatgacataaccgatgcatctagcttggagctttcagaatttgaaagaatgaaggttgaaagacagatatcagcttcactttatgcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33273893 |
atggcgaagaatgatgacataaccgatgcatctagcttggagctttcagaatttgaaagaatgaaggttgaaagacagatatcagcttcactttatgcta |
33273794 |
T |
|
| Q |
101 |
ttaatggagtgcatgaatacatggaaactgttcaagagtctaatgaagccttatgggatcttccacccttgtgctccttgttctgtt-aaacttttataa |
199 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33273793 |
ttaatggagtgcatgaatacatggaaactgttcaagagtctaatgaagccttatgggatcttccacccttgtgctccttgttctgttaaaacttttataa |
33273694 |
T |
|
| Q |
200 |
ggtctaaattaatgaatctgcaaatgtttcttccaagtattat |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33273693 |
ggtctaaattaatgaatctgcaaatgtttcttccaaatattat |
33273651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 175
Target Start/End: Original strand, 10030635 - 10030766
Alignment:
| Q |
44 |
tttcagaatttgaaagaatgaaggttgaaagacagatatcagcttcactttatgctattaatggagtgcatgaatacatggaaactgttcaagagtctaa |
143 |
Q |
| |
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|||||||||||||||| ||||| |||||||| || |||||||||||||||||||| |||||||| || || || |||||| ||| |||||| || | || |
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| T |
10030635 |
tttcagaatttgaaaggatgaaagttgaaaggcaaatatcagcttcactttatgcaattaatggtgttcaagagtacatgaaaaatgttcaggattgcaa |
10030734 |
T |
|
| Q |
144 |
tgaagccttatgggatcttccacccttgtgct |
175 |
Q |
| |
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|||||| |||| ||||| |||| ||||||| |
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| T |
10030735 |
tgaagctcaatggaatctttcacctttgtgct |
10030766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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