View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1390_high_142 (Length: 251)

Name: NF1390_high_142
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1390_high_142
NF1390_high_142
[»] chr3 (40 HSPs)
chr3 (1-141)||(44000187-44000326)
chr3 (142-229)||(43999896-43999983)
chr3 (5-136)||(2135000-2135131)
chr3 (5-104)||(44116902-44117000)
chr3 (5-136)||(4851480-4851611)
chr3 (5-136)||(28675720-28675851)
chr3 (5-104)||(39052862-39052960)
chr3 (11-121)||(28624950-28625058)
chr3 (5-121)||(31883046-31883161)
chr3 (5-104)||(38213317-38213415)
chr3 (5-104)||(1344731-1344829)
chr3 (5-104)||(3864699-3864796)
chr3 (5-104)||(12349195-12349293)
chr3 (5-104)||(24571244-24571342)
chr3 (5-104)||(29584838-29584936)
chr3 (1-115)||(29646017-29646131)
chr3 (5-96)||(47958456-47958546)
chr3 (5-111)||(51925232-51925337)
chr3 (5-104)||(53557819-53557917)
chr3 (5-104)||(54622820-54622918)
chr3 (1-111)||(33364798-33364907)
chr3 (1-104)||(3695312-3695414)
chr3 (5-136)||(26282411-26282542)
chr3 (142-184)||(44000193-44000235)
chr3 (5-96)||(49748935-49749025)
chr3 (5-50)||(20609672-20609717)
chr3 (5-104)||(21221384-21221482)
chr3 (5-50)||(21373946-21373991)
chr3 (5-50)||(22484767-22484812)
chr3 (1-104)||(25860441-25860543)
chr3 (5-104)||(34026630-34026728)
chr3 (5-49)||(25927351-25927395)
chr3 (5-49)||(42636427-42636471)
chr3 (99-135)||(43999941-43999977)
chr3 (5-49)||(51259804-51259848)
chr3 (5-50)||(3964304-3964349)
chr3 (58-111)||(45690977-45691029)
chr3 (5-50)||(50678814-50678859)
chr3 (63-115)||(10747169-10747221)
chr3 (64-104)||(53046723-53046763)
[»] chr8 (37 HSPs)
chr8 (5-109)||(16595194-16595297)
chr8 (5-131)||(29672368-29672494)
chr8 (5-138)||(12753370-12753503)
chr8 (5-104)||(29563271-29563369)
chr8 (5-104)||(41709739-41709837)
chr8 (5-104)||(45446417-45446515)
chr8 (5-136)||(8673100-8673231)
chr8 (5-104)||(6386538-6386636)
chr8 (5-50)||(15001481-15001526)
chr8 (5-104)||(32020046-32020144)
chr8 (5-104)||(32303630-32303728)
chr8 (5-104)||(34063090-34063188)
chr8 (1-50)||(37664324-37664373)
chr8 (11-136)||(13406986-13407111)
chr8 (1-131)||(35225597-35225726)
chr8 (5-136)||(30543067-30543198)
chr8 (1-104)||(3251697-3251799)
chr8 (5-104)||(4052444-4052540)
chr8 (5-136)||(31513628-31513759)
chr8 (1-46)||(54189-54234)
chr8 (5-50)||(21272699-21272744)
chr8 (5-50)||(22756456-22756501)
chr8 (5-104)||(25478205-25478303)
chr8 (5-104)||(27103921-27104019)
chr8 (5-111)||(41548573-41548678)
chr8 (6-108)||(5859518-5859619)
chr8 (5-111)||(10467019-10467124)
chr8 (5-49)||(14005089-14005133)
chr8 (5-49)||(30501161-30501205)
chr8 (6-104)||(31732026-31732123)
chr8 (5-103)||(37618437-37618534)
chr8 (5-104)||(5968909-5969007)
chr8 (1-50)||(3800984-3801033)
chr8 (5-50)||(16485854-16485899)
chr8 (65-128)||(18297469-18297534)
chr8 (5-49)||(7394859-7394903)
chr8 (142-190)||(35225587-35225635)
[»] chr6 (35 HSPs)
chr6 (1-121)||(27824715-27824834)
chr6 (5-131)||(10959935-10960060)
chr6 (1-136)||(3932872-3933007)
chr6 (1-104)||(15277345-15277447)
chr6 (1-96)||(24242634-24242728)
chr6 (5-136)||(2614825-2614956)
chr6 (5-136)||(17867764-17867895)
chr6 (5-136)||(17877547-17877678)
chr6 (21-113)||(29424652-29424743)
chr6 (5-121)||(31870169-31870284)
chr6 (5-104)||(3259645-3259743)
chr6 (5-50)||(7396194-7396239)
chr6 (5-104)||(11613860-11613958)
chr6 (5-104)||(32132449-32132547)
chr6 (5-104)||(34176792-34176890)
chr6 (5-122)||(10485101-10485217)
chr6 (58-124)||(28068753-28068819)
chr6 (5-50)||(166992-167037)
chr6 (58-111)||(32614059-32614112)
chr6 (5-49)||(9902727-9902771)
chr6 (58-131)||(10552710-10552785)
chr6 (6-50)||(17443277-17443321)
chr6 (6-50)||(18057534-18057578)
chr6 (5-49)||(24203378-24203422)
chr6 (155-201)||(8342783-8342829)
chr6 (5-104)||(10324180-10324278)
chr6 (5-50)||(3379725-3379770)
chr6 (5-50)||(11279143-11279188)
chr6 (5-50)||(11382079-11382124)
chr6 (5-46)||(29054375-29054416)
chr6 (1-50)||(32409917-32409966)
chr6 (6-42)||(4494185-4494221)
chr6 (5-49)||(8177950-8177994)
chr6 (6-50)||(14925526-14925570)
chr6 (5-49)||(32860067-32860111)
[»] chr4 (49 HSPs)
chr4 (58-131)||(7001792-7001865)
chr4 (5-136)||(33552865-33552996)
chr4 (5-111)||(44324365-44324470)
chr4 (5-97)||(24002310-24002402)
chr4 (1-136)||(20802550-20802685)
chr4 (5-141)||(55065356-55065491)
chr4 (5-104)||(23521845-23521943)
chr4 (5-104)||(43641064-43641162)
chr4 (5-137)||(24210249-24210382)
chr4 (5-136)||(56154553-56154684)
chr4 (5-104)||(4325756-4325854)
chr4 (5-104)||(9512363-9512461)
chr4 (5-115)||(37695564-37695673)
chr4 (14-104)||(42869938-42870028)
chr4 (1-129)||(9435338-9435466)
chr4 (5-136)||(29616102-29616233)
chr4 (5-136)||(33177055-33177186)
chr4 (5-141)||(36743711-36743847)
chr4 (5-136)||(55593817-55593948)
chr4 (1-136)||(21579958-21580093)
chr4 (5-104)||(50727936-50728034)
chr4 (5-104)||(50735950-50736048)
chr4 (1-96)||(2725152-2725245)
chr4 (5-131)||(7554980-7555105)
chr4 (5-104)||(21202705-21202802)
chr4 (5-104)||(29785560-29785658)
chr4 (5-50)||(38812538-38812583)
chr4 (1-50)||(40792435-40792484)
chr4 (8-49)||(41720862-41720903)
chr4 (5-96)||(47642514-47642604)
chr4 (58-138)||(985214-985293)
chr4 (11-104)||(14296562-14296654)
chr4 (11-104)||(14314810-14314902)
chr4 (5-121)||(16320469-16320582)
chr4 (61-121)||(20644319-20644379)
chr4 (1-49)||(31445895-31445943)
chr4 (6-50)||(32181281-32181325)
chr4 (5-111)||(52949679-52949783)
chr4 (6-111)||(9807114-9807218)
chr4 (3-49)||(2629972-2630018)
chr4 (8-103)||(42772724-42772818)
chr4 (58-104)||(49152174-49152220)
chr4 (5-50)||(12600904-12600949)
chr4 (5-50)||(28115270-28115315)
chr4 (5-50)||(37865771-37865816)
chr4 (5-50)||(50186546-50186591)
chr4 (5-50)||(50729565-50729610)
chr4 (5-41)||(1231338-1231374)
chr4 (5-49)||(3649655-3649699)
[»] chr7 (36 HSPs)
chr7 (5-141)||(29661251-29661387)
chr7 (5-136)||(46633630-46633761)
chr7 (1-130)||(34117392-34117520)
chr7 (5-136)||(11321916-11322047)
chr7 (5-105)||(21784836-21784935)
chr7 (59-121)||(29372863-29372925)
chr7 (5-104)||(3922734-3922832)
chr7 (5-104)||(10932588-10932686)
chr7 (5-104)||(40753121-40753219)
chr7 (5-104)||(47947726-47947824)
chr7 (5-104)||(47953156-47953254)
chr7 (5-138)||(18386456-18386589)
chr7 (6-104)||(44748661-44748758)
chr7 (5-136)||(32873800-32873931)
chr7 (5-104)||(41211231-41211330)
chr7 (5-136)||(43158717-43158848)
chr7 (5-104)||(26371840-26371938)
chr7 (5-104)||(26994256-26994354)
chr7 (8-94)||(29992729-29992813)
chr7 (5-104)||(36769600-36769698)
chr7 (1-50)||(41665602-41665651)
chr7 (5-111)||(26652825-26652930)
chr7 (5-115)||(34295435-34295544)
chr7 (1-111)||(9913484-9913593)
chr7 (1-111)||(9927172-9927281)
chr7 (5-50)||(34519527-34519572)
chr7 (1-131)||(329409-329538)
chr7 (8-104)||(18470650-18470745)
chr7 (7-50)||(22724564-22724607)
chr7 (58-136)||(30849329-30849408)
chr7 (1-121)||(1363586-1363704)
chr7 (66-124)||(29455937-29455995)
chr7 (1-35)||(37967008-37967042)
chr7 (5-50)||(26910441-26910486)
chr7 (64-120)||(47316787-47316844)
chr7 (5-41)||(1870163-1870199)
[»] chr5 (31 HSPs)
chr5 (1-104)||(39788154-39788257)
chr5 (5-131)||(4818176-4818302)
chr5 (5-104)||(5571680-5571776)
chr5 (5-89)||(17031134-17031217)
chr5 (5-104)||(28090556-28090654)
chr5 (1-136)||(40182393-40182528)
chr5 (5-111)||(3735312-3735417)
chr5 (1-50)||(7523187-7523236)
chr5 (5-104)||(31770627-31770725)
chr5 (58-131)||(32313773-32313846)
chr5 (5-104)||(32528677-32528775)
chr5 (1-121)||(8561014-8561132)
chr5 (5-104)||(2351642-2351740)
chr5 (5-104)||(6284334-6284433)
chr5 (5-104)||(7208266-7208364)
chr5 (5-121)||(31644391-31644506)
chr5 (5-104)||(39918469-39918567)
chr5 (5-50)||(21739197-21739242)
chr5 (5-104)||(29241340-29241438)
chr5 (5-50)||(32093017-32093062)
chr5 (1-50)||(34794902-34794951)
chr5 (5-49)||(553413-553457)
chr5 (5-49)||(700637-700681)
chr5 (5-49)||(4689734-4689778)
chr5 (5-49)||(7770315-7770359)
chr5 (1-49)||(24036246-24036294)
chr5 (1-136)||(31880108-31880243)
chr5 (5-104)||(40489299-40489397)
chr5 (5-50)||(11963356-11963401)
chr5 (64-136)||(23091398-23091471)
chr5 (5-49)||(8136853-8136897)
[»] scaffold0169 (2 HSPs)
scaffold0169 (5-104)||(12572-12670)
scaffold0169 (5-104)||(18090-18188)
[»] chr1 (38 HSPs)
chr1 (1-104)||(16386825-16386927)
chr1 (61-131)||(4895337-4895407)
chr1 (5-104)||(844829-844927)
chr1 (5-131)||(1601116-1601242)
chr1 (5-116)||(16437321-16437431)
chr1 (5-111)||(31004096-31004201)
chr1 (5-138)||(45490980-45491113)
chr1 (5-136)||(6711151-6711282)
chr1 (5-136)||(7183856-7183987)
chr1 (5-104)||(12890209-12890307)
chr1 (5-104)||(16451098-16451196)
chr1 (5-138)||(17887883-17888017)
chr1 (5-104)||(28340408-28340506)
chr1 (5-104)||(42510496-42510594)
chr1 (5-104)||(50540315-50540413)
chr1 (5-111)||(25539819-25539924)
chr1 (58-130)||(30798848-30798920)
chr1 (8-104)||(30105788-30105883)
chr1 (5-104)||(35387416-35387514)
chr1 (1-104)||(44738143-44738244)
chr1 (5-50)||(1351540-1351585)
chr1 (5-50)||(16476260-16476305)
chr1 (5-104)||(24339744-24339840)
chr1 (5-104)||(26118320-26118418)
chr1 (1-50)||(46447688-46447737)
chr1 (5-104)||(51264466-51264564)
chr1 (5-49)||(26764900-26764944)
chr1 (5-111)||(45658785-45658890)
chr1 (5-49)||(50382508-50382552)
chr1 (5-121)||(38663086-38663201)
chr1 (142-180)||(4895337-4895375)
chr1 (66-131)||(51703327-51703393)
chr1 (5-120)||(2761661-2761774)
chr1 (5-50)||(41967954-41967999)
chr1 (5-49)||(6029406-6029450)
chr1 (5-49)||(16643287-16643331)
chr1 (5-49)||(46154925-46154969)
chr1 (5-49)||(51703268-51703312)
[»] scaffold0077 (1 HSPs)
scaffold0077 (11-118)||(7503-7610)
[»] chr2 (31 HSPs)
chr2 (1-104)||(32497877-32497979)
chr2 (1-131)||(11114807-11114936)
chr2 (5-131)||(16177913-16178036)
chr2 (5-104)||(17540676-17540775)
chr2 (5-104)||(5278864-5278962)
chr2 (1-50)||(30798515-30798564)
chr2 (5-104)||(34338772-34338870)
chr2 (5-50)||(38993101-38993146)
chr2 (1-49)||(33889259-33889307)
chr2 (5-104)||(2645116-2645214)
chr2 (5-104)||(7258858-7258957)
chr2 (5-96)||(7761603-7761693)
chr2 (5-50)||(9717239-9717284)
chr2 (5-104)||(9732960-9733058)
chr2 (5-104)||(16104236-16104334)
chr2 (5-50)||(19513719-19513764)
chr2 (5-104)||(30326361-30326459)
chr2 (5-104)||(35114747-35114845)
chr2 (5-138)||(42706285-42706419)
chr2 (5-104)||(44284591-44284689)
chr2 (1-49)||(13829454-13829502)
chr2 (5-49)||(26418939-26418983)
chr2 (5-136)||(18685765-18685896)
chr2 (58-121)||(32766587-32766650)
chr2 (5-104)||(3913490-3913588)
chr2 (63-116)||(1247105-1247158)
chr2 (5-50)||(6896183-6896228)
chr2 (5-50)||(37308670-37308715)
chr2 (5-41)||(1247171-1247207)
chr2 (64-104)||(4641478-4641518)
chr2 (5-49)||(37003898-37003942)
[»] scaffold0014 (1 HSPs)
scaffold0014 (1-104)||(101911-102013)
[»] scaffold0181 (1 HSPs)
scaffold0181 (5-104)||(19126-19224)
[»] scaffold0054 (1 HSPs)
scaffold0054 (5-104)||(23539-23635)
[»] scaffold0004 (1 HSPs)
scaffold0004 (5-104)||(373000-373098)
[»] scaffold0098 (1 HSPs)
scaffold0098 (5-130)||(51374-51499)
[»] scaffold0208 (1 HSPs)
scaffold0208 (5-50)||(2374-2419)
[»] scaffold0027 (1 HSPs)
scaffold0027 (5-103)||(15135-15232)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-49)||(5472-5520)
[»] scaffold0650 (1 HSPs)
scaffold0650 (5-50)||(1679-1724)
[»] scaffold0360 (1 HSPs)
scaffold0360 (5-50)||(15417-15462)


Alignment Details
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 44000326 - 44000187
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||       |||||||||||||||||||||||||||||||| ||||| | ||    
T  44000326 acatcacaattttttgtcccacgtacaagttatctgaaatacaaaaatagtttttt-gtccaccaaaaatcgtataagaccaaaaattattcaataccat 44000228  T
Q  101 aaaagtttgtcttgtattgttttgtcttgtgatgtattatt 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  44000227 aaaagtttgtcttgtattgttttgtcttgtgatgtattatt 44000187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 142 - 229
Target Start/End: Complemental strand, 43999983 - 43999896
Alignment:
Q  142 aataccataaaagtttgtattgtgttgttttgtcttgtgatgttttgtctagtatatactcttttgctaaaacgcgcgtatgtttcat 229  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||    
T  43999983 aataccataaaagtttgtcttgtgttgttttgtcttgtgatgttttgtctagtacatactcttttgttaaaacgcacgtatgtttcat 43999896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 2135131 - 2135000
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    |||||||||||||||||||||||| |||||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| || |||    
T  2135131 cacaactttttgtcccacgtacaaattatctaaaataccaaaatagcacttt-gtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 2135033  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgta 136  Q
    | |||||||||| ||||| || |||||| ||||    
T  2135032 aatttgtcttgtgttgttctgccttgtgttgta 2135000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 44117000 - 44116902
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  44117000 cacaactttttgtcccacgtacaagttgtctaaaatacaaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 44116902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 4851480 - 4851611
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| || |||    
T  4851480 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 4851578  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgta 136  Q
    | |||||| ||| ||||| || |||||| ||||    
T  4851579 aatttgtcctgtcttgttctgccttgtgttgta 4851611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 28675851 - 28675720
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| || |||    
T  28675851 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 28675753  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgta 136  Q
    | |||||| ||| ||||| || |||||| ||||    
T  28675752 aatttgtcctgtgttgttctgccttgtgttgta 28675720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 39052862 - 39052960
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||        |||| ||||||||||||||| || | |||||||||||||||||||||    
T  39052862 cacaactttttgtcccacgtacaagttgtctaaaataccaaaata-acattttgtcccccaaaaatcgtataaaacaacaaattactcaatgctataaaa 39052960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 28624950 - 28625058
Alignment:
Q  11 tttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaagtttgt 110  Q
    ||||||||| ||||| ||||||||| ||||||||||||         ||| |||||||||| |||||||| |||||||| ||||| | ||||||||||||    
T  28624950 tttttgtcctacgtataagttatctaaaatacaaaaat--cattttagtctaccaaaaatcttataagacaaaaaattattcaataccataaaagtttgt 28625047  T
Q  111 cttgtattgtt 121  Q
    ||||| |||||    
T  28625048 cttgtgttgtt 28625058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 31883046 - 31883161
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||  |||||||       |||| ||||||||||||||| || |||||||| ||||||  ||||||    
T  31883046 cacaactttttgtcccacgtacaagttgtctaaaatatcaaaatag-cattttgtcccccaaaaatcgtataaaacaaaaaattattcaatgtcataaaa 31883144  T
Q  105 gtttgtcttgtattgtt 121  Q
     |||||| ||| |||||    
T  31883145 atttgtcctgtgttgtt 31883161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 38213415 - 38213317
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||        |||| ||||||||||||||| || |||||||||||| ||| ||||||    
T  38213415 cacaactttttgtcccacgtacaagttgtctaaaataccaaaata-ccattttgtcccccaaaaatcgtataaaacaaaaaattactcattgccataaaa 38213317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 1344731 - 1344829
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||| |||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  1344731 cacaactttttgtctcacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 1344829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 3864699 - 3864796
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       |||| ||||||||| ||||| || |||||||||||||||| ||||||    
T  3864699 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtcc-ccaaaaatcatataaaacaaaaaattactcaatgccataaaa 3864796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 12349195 - 12349293
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||| ||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  12349195 cacaactttatgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 12349293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 24571342 - 24571244
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||||||       |||| |||||||||| |||| || | |||||||||||||| ||||||    
T  24571342 cacaactttttgtcccatgtacaagttgtctaaaatacaaaaatag-gattttgtcccccaaaaatcgaataaaacaacaaattactcaatgccataaaa 24571244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 29584936 - 29584838
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| |  |||||||||||||||| ||||||    
T  29584936 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccttcaaaaatcgtataaaataaaaaattactcaatgcaataaaa 29584838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 29646131 - 29646017
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagac-caaaaattactcaatgcta 99  Q
    ||||||||||||||||||||||||||||||| | | |||||| |||||||       |||| ||||||||||||||| ||  |||||||| | ||||| |    
T  29646131 acatcacaactttttgtcccacgtacaagttgtttaaaataccaaaatag-cattttgtcccccaaaaatcgtataaaacaaaaaaattatttaatgcca 29646033  T
Q  100 taaaagtttgtcttgt 115  Q
    ||||| ||||||||||    
T  29646032 taaaaatttgtcttgt 29646017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 47958456 - 47958546
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatg 96  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||    
T  47958456 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatg 47958546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 51925232 - 51925337
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| | || ||||| ||||||        |||| ||||||||||||||| || |||||||| ||||||| ||||||    
T  51925232 cacaactttttgtcccacgtacaagttgtttttaataccaaaata-acatttcgtcccccaaaaatcgtataaaacaaaaaattattcaatgccataaaa 51925330  T
Q  105 gtttgtc 111  Q
     ||||||    
T  51925331 atttgtc 51925337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 53557819 - 53557917
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||| |||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  53557819 cacaactttttgtctcacgtacaagttgtctaaaataccaaaatag-cattttgtccttcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 53557917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 54622820 - 54622918
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||| ||||||||||||||| ||| |||||| |||||||       |||| ||||||||||||||| || |||||||| ||||||| ||||||    
T  54622820 cacaactttttatcccacgtacaagttgtctaaaataccaaaatag-catttcgtcccccaaaaatcgtataaaacaaaaaattattcaatgccataaaa 54622918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 33364798 - 33364907
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    |||||||||||||||||| |||||||||||| ||| |||||  |||||||       |||| ||||||||||||||| || |||||||| ||||||  ||    
T  33364798 acatcacaactttttgtctcacgtacaagttgtctaaaatatcaaaatag-cattttgtcccccaaaaatcgtataaaacaaaaaattattcaatgtcat 33364896  T
Q  101 aaaagtttgtc 111  Q
    |||| ||||||    
T  33364897 aaaaatttgtc 33364907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 3695312 - 3695414
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    |||||||||| |||||||||||||||||||| ||| |||||| |||||||        ||| |||||||| |||||| || | |||||||||||||| ||    
T  3695312 acatcacaaccttttgtcccacgtacaagttgtctaaaataccaaaatagtatttta-tcccccaaaaattgtataaaacaacaaattactcaatgccat 3695410  T
Q  101 aaaa 104  Q
    ||||    
T  3695411 aaaa 3695414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 26282411 - 26282542
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    ||||||||||||||||||||| ||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||| ||||||| || |||    
T  26282411 cacaactttttgtcccacgtataagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattattcaatgccataaaa 26282509  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgta 136  Q
    | |||||| |||  |||| ||||||||| ||||    
T  26282510 aatttgtcatgtgctgttctgtcttgtgttgta 26282542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 44000235 - 44000193
Alignment:
Q  142 aataccataaaagtttgtattgtgttgttttgtcttgtgatgt 184  Q
    |||||||||||||||||| |||| |||||||||||||||||||    
T  44000235 aataccataaaagtttgtcttgtattgttttgtcttgtgatgt 44000193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 49748935 - 49749025
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatg 96  Q
    ||||||||||||||||||||||||||| | |||||||| ||||||        |||| ||||||||||||||| || |||||||| ||||||    
T  49748935 cacaactttttgtcccacgtacaagttgttttaaataccaaaata-acatttcgtcccccaaaaatcgtataaaacaaaaaattattcaatg 49749025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 20609672 - 20609717
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||    
T  20609672 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag 20609717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 21221384 - 21221482
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||| |||||||||||| ||| |||||| |||||||       ||||  ||||||| |||||| || |||||||||||||||| ||||||    
T  21221384 cacaactttttgtctcacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaattgtataaaacaaaaaattactcaatgccataaaa 21221482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 21373991 - 21373946
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||    
T  21373991 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag 21373946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 22484767 - 22484812
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||||||    
T  22484767 cacaactttttgtcccacgtataagttgtctaaaatacaaaaatag 22484812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 25860441 - 25860543
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    |||||||||||||||||| |||||||||||| ||| ||||||  ||||||       || | ||||||||||||||| || |||||||||||| ||| ||    
T  25860441 acatcacaactttttgtctcacgtacaagttgtctaaaataccgaaatag-cattttgttctccaaaaatcgtataaaacaaaaaattactcattgccat 25860539  T
Q  101 aaaa 104  Q
    ||||    
T  25860540 aaaa 25860543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 34026728 - 34026630
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||| ||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||| | ||||||    
T  34026728 cacaattttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaataccataaaa 34026630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 25927351 - 25927395
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||    
T  25927351 cacaactttttgtcccacgtacaagttgtctaaaataccaaaata 25927395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 42636427 - 42636471
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||    
T  42636427 cacaactttttgtcccacgtacaagttgtctaaaataccaaaata 42636471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 43999977 - 43999941
Alignment:
Q  99 ataaaagtttgtcttgtattgttttgtcttgtgatgt 135  Q
    ||||||||||||||||| |||||||||||||||||||    
T  43999977 ataaaagtttgtcttgtgttgttttgtcttgtgatgt 43999941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 51259804 - 51259848
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||    
T  51259804 cacaactttttgtcccacgtacaagttgtctaaaataccaaaata 51259848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 3964349 - 3964304
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||| ||||||||| ||| |||||| |||||||    
T  3964349 cacaactttttgtcccatgtacaagttgtctaaaataccaaaatag 3964304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 45690977 - 45691029
Alignment:
Q  58 gtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaagtttgtc 111  Q
    |||| ||||||||||||||| || |||||||| |||||||||||||| ||||||    
T  45690977 gtcctccaaaaatcgtataaaac-aaaaattattcaatgctataaaaatttgtc 45691029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 50678859 - 50678814
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    |||||||||||||| |||||||||||| ||| |||||| |||||||    
T  50678859 cacaactttttgtctcacgtacaagttgtctaaaataccaaaatag 50678814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 10747221 - 10747169
Alignment:
Q  63 ccaaaaatcgtataagaccaaaaattactcaatgctataaaagtttgtcttgt 115  Q
    ||||||||||||||| || |||||||| ||||||  |||||| ||||||||||    
T  10747221 ccaaaaatcgtataaaacaaaaaattattcaatgtcataaaaatttgtcttgt 10747169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 53046723 - 53046763
Alignment:
Q  64 caaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||| || |||||||||||||||| ||||||    
T  53046723 caaaaatcgtataaaacaaaaaattactcaatgccataaaa 53046763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 16595194 - 16595297
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||       || ||||||||||||||||||||||||||||| ||||| | | ||||    
T  16595194 cacaactttttgtcccacgtacaagttatctaaaatacaaaaatag-ctttttgttcaccaaaaatcgtataagaccaaaaattattcaataccaaaaaa 16595292  T
Q  105 gtttg 109  Q
    |||||    
T  16595293 gtttg 16595297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 29672368 - 29672494
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| || |||    
T  29672368 cacaactttttgtcccacgtacaagttatctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccatgaaa 29672466  T
Q  104 agtttgtcttgtattgttttgtcttgtg 131  Q
    | |||||| ||| ||||| |||||||||    
T  29672467 aatttgtcctgtgttgttctgtcttgtg 29672494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 12753370 - 12753503
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||||||| |||||||| ||| |||||| ||||||        |||| ||||||||||||||| || | |||||||||||||| ||||||    
T  12753370 cacaactttttgtcccacatacaagttgtctaaaataccaaaata-acattttgtcccccaaaaatcgtataaaacaacaaattactcaatgccataaaa 12753468  T
Q  105 -gtttgtcttgtattgttttgtcttgtgatgtatt 138  Q
      |||||| ||| ||||| ||||||||| ||||||    
T  12753469 tttttgtcatgtgttgttctgtcttgtgttgtatt 12753503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 29563271 - 29563369
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  29563271 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-tattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 29563369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 41709837 - 41709739
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||| ||||||||||||||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  41709837 cacaactttttgtccaacgtacaagttatctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 41709739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 45446515 - 45446417
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  45446515 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 45446417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 8673100 - 8673231
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||| ||||| || |||||||||||||||| || |||    
T  8673100 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcatataaaacaaaaaattactcaatgccataaaa 8673198  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgta 136  Q
    | |||||| |||  ||||||| |||||| ||||    
T  8673199 attttgtcctgtgctgttttgccttgtgttgta 8673231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 6386636 - 6386538
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||| |||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  6386636 cacaactttttgtctcacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 6386538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 15001526 - 15001481
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||    
T  15001526 cacaactttttgtcccacgtacaagttatctaaaataccaaaatag 15001481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 32020046 - 32020144
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||| ||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  32020046 cacaactttttgttccacgtacaagttgtctaaaataccaaaatag-tattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 32020144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 32303630 - 32303728
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||| ||||| || |||||||||||||||| ||||||    
T  32303630 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcatataaaacaaaaaattactcaatgccataaaa 32303728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 34063188 - 34063090
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||| ||||||| ||||||    
T  34063188 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattattcaatgccataaaa 34063090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 37664324 - 37664373
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||||||||||||||||| ||| |||||| |||||||    
T  37664324 acatcacaactttttgtcccacgtacaagttgtctaaaataccaaaatag 37664373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 136
Target Start/End: Original strand, 13406986 - 13407111
Alignment:
Q  11 tttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaaagtttg 109  Q
    |||||||| |||||||||||| ||| |||||| |||||||       || | ||||||||||||||| || ||||||||||||||||||| |||| ||||    
T  13406986 tttttgtctcacgtacaagttgtctaaaataccaaaatagcatttt-gtgccccaaaaatcgtataaaacaaaaaattactcaatgctataaaaaatttg 13407084  T
Q  110 tcttgtattgttttgtcttgtgatgta 136  Q
    || ||| ||||| || |||||| ||||    
T  13407085 tcatgtgttgttctgccttgtgttgta 13407111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 35225726 - 35225597
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    |||||||||||||||||| || ||||||||| ||| ||||||||||||||       |||  ||||||||| ||||| ||   |||||| ||||| | ||    
T  35225726 acatcacaactttttgtcacaagtacaagttgtctaaaatacaaaaatag-catttcgtcacccaaaaatcatataaaacaggaaattattcaataccat 35225628  T
Q  101 aaaagtttgtcttgtattgttttgtcttgtg 131  Q
    |||| |||||||||| ||||| |||||||||    
T  35225627 aaaaatttgtcttgtgttgttctgtcttgtg 35225597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 30543067 - 30543198
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||| |||||||||||||||| ||| |||||| ||||||        |||| ||||||||||||||| ||  ||||||||||||||| ||||||    
T  30543067 cacaacttttcgtcccacgtacaagttgtctaaaataccaaaata-acattttgtcccccaaaaatcgtataaaacataaaattactcaatgccataaaa 30543165  T
Q  105 -gtttgtcttgtattgttttgtcttgtgatgta 136  Q
      |||||| ||| ||||| || |||||| ||||    
T  30543166 tatttgtcctgtgttgttctgccttgtgttgta 30543198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 3251697 - 3251799
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    ||||||||||||||| ||| ||||||||||| ||| |||||| ||||||        ||||  |||||||||||||| || |||||||||||||||| ||    
T  3251697 acatcacaactttttatcctacgtacaagttgtctaaaataccaaaata-acattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccat 3251795  T
Q  101 aaaa 104  Q
    ||||    
T  3251796 aaaa 3251799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 4052540 - 4052444
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| ||  ||||||||||||||| ||||||    
T  4052540 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaac--aaaattactcaatgccataaaa 4052444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 31513628 - 31513759
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    ||||||||||||||| | ||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| || |||    
T  31513628 cacaactttttgtcctaggtacaagttgtctaaaataccaaaatagcatttt-gtccttcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 31513726  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgta 136  Q
    | |||||| ||| ||||| || |||||| ||||    
T  31513727 aatttgtcatgtgttgttctgccttgtgttgta 31513759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 54234 - 54189
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaa 46  Q
    |||||||||||||||||||||| |||||||||||  ||||||||||    
T  54234 acatcacaactttttgtcccacatacaagttatcgaaaatacaaaa 54189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 21272744 - 21272699
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||    
T  21272744 cacaactttttgtcccacgtacaagttgtctaaaatactaaaatag 21272699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 22756456 - 22756501
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    |||||||||||||  |||||||||||||||| ||||||||||||||    
T  22756456 cacaactttttgtatcacgtacaagttatctaaaatacaaaaatag 22756501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 25478303 - 25478205
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||| ||||||||||| ||| |||||| |||||||       ||||   ||||||||||||| || |||||||||||||||| ||||||    
T  25478303 cacaactttttgtcctacgtacaagttgtctaaaataccaaaatag-tattttgtccctaaaaaatcgtataaaacaaaaaattactcaatgccataaaa 25478205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 27104019 - 27103921
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||  |||||||       ||||  |||||||| ||||| || |||||||||||||||| ||||||    
T  27104019 cacaactttttgtcccacgtacaagttgtctaaaatatcaaaatag-cattttgtccctcaaaaatcatataaaacaaaaaattactcaatgccataaaa 27103921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 41548678 - 41548573
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||  ||||||        |||| ||||||||||||||| || |||||||| ||||||  ||||||    
T  41548678 cacaactttttgtcccacgtacaagttgtctaaaatatcaaaata-acattttgtcccccaaaaatcgtataaaacaaaaaattattcaatgtcataaaa 41548580  T
Q  105 gtttgtc 111  Q
     ||||||    
T  41548579 atttgtc 41548573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 5859518 - 5859619
Alignment:
Q  6 acaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaag 105  Q
    |||||||||||||  ||||||||||||||| |||||| |||||||       |||||  ||||||| ||||||||||| ||||| ||||| | |||||||    
T  5859518 acaactttttgtcatacgtacaagttatctaaaatactaaaatag-tattttgtccataaaaaatcttataagaccaataattaatcaatacaataaaag 5859616  T
Q  106 ttt 108  Q
    |||    
T  5859617 ttt 5859619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 10467124 - 10467019
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||  |||||||       |||| ||||||||||||||| || |||||||| || |||  ||||||    
T  10467124 cacaactttttgtcccacgtacaagttgtctaaaatatcaaaatag-cattttgtcccccaaaaatcgtataaaacaaaaaattattctatgtcataaaa 10467026  T
Q  105 gtttgtc 111  Q
     ||||||    
T  10467025 atttgtc 10467019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 14005089 - 14005133
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||    
T  14005089 cacaactttttgtcccacgtacaagttgtctaaaataccaaaata 14005133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 30501205 - 30501161
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    |||||||||||||||||||||||||||  || |||||||||||||    
T  30501205 cacaactttttgtcccacgtacaagttgcctaaaatacaaaaata 30501161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 31732123 - 31732026
Alignment:
Q  6 acaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||| ||| |||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  31732123 acaactttttgtctcacatacaagttgtctaaaataccaaaatagcatttt-gtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 31732026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 103
Target Start/End: Original strand, 37618437 - 37618534
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaa 103  Q
    |||||||||||||| |||||||||||| | |||||||| |||||||       |||| |||||||| |||||| || |||||||| ||||||| |||||    
T  37618437 cacaactttttgtctcacgtacaagttgttttaaataccaaaatag-catttcgtcccccaaaaattgtataaaacaaaaaattattcaatgccataaa 37618534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 5968909 - 5969007
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||| |||||||||||| || ||| |||||| ||||||        ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  5968909 cacaactttttatcccacgtacaaattgtctaaaataccaaaata-acattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 5969007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 3800984 - 3801033
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    |||||||||||||||||  ||| ||| |||||||| ||||||||||||||    
T  3800984 acatcacaactttttgtttcacatactagttatctaaaatacaaaaatag 3801033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 16485854 - 16485899
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||| ||||| ||||| ||| ||||||||||||||    
T  16485854 cacaactttttgtcctacgtataagttttctaaaatacaaaaatag 16485899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 18297469 - 18297534
Alignment:
Q  65 aaaaatcgtataagaccaaaaattactc-aatgctataaaagtttg-tcttgtattgttttgtctt 128  Q
    ||||||||||||||||||||||||| || ||| | |||||| |||| |||||||||||||| ||||    
T  18297469 aaaaatcgtataagaccaaaaattattcaaataccataaaattttgttcttgtattgttttatctt 18297534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 7394859 - 7394903
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    |||||||||||||| |||||||||||| ||| |||||| ||||||    
T  7394859 cacaactttttgtctcacgtacaagttgtctaaaataccaaaata 7394903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 190
Target Start/End: Complemental strand, 35225635 - 35225587
Alignment:
Q  142 aataccataaaagtttgtattgtgttgttttgtcttgtgatgttttgtc 190  Q
    |||||||||||| ||||| |||||||||| ||||||||| ||| |||||    
T  35225635 aataccataaaaatttgtcttgtgttgttctgtcttgtgttgtgttgtc 35225587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 27824715 - 27824834
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||||       ||||| |||||||| ||||||| ||||||||| ||||| | ||    
T  27824715 acatcacaactttttgtcccacgtacgagttatccaaaatacaaaaatag-ctttttgtccaacaaaaatcatataagatcaaaaattattcaataccat 27824813  T
Q  101 aaaagtttgtcttgtattgtt 121  Q
    ||||||||||| |||||||||    
T  27824814 aaaagtttgtcatgtattgtt 27824834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 10960060 - 10959935
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||       |||| ||||||||||||||| || ||| || | ||||||| ||||||    
T  10960060 cacaactttttgtcccacgtacaagttgtctaaaatacaaaaatag-cattttgtcccccaaaaatcgtataaaacaaaatatcattcaatgccataaaa 10959962  T
Q  105 gtttgtcttgtattgttttgtcttgtg 131  Q
     |||||| ||| ||||| || ||||||    
T  10959961 atttgtcatgtgttgttctgccttgtg 10959935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 3932872 - 3933007
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    ||||||||||||||||||||||||||||||| ||| |||||| ||||||        ||||  |||||||||||||| || |||||||| ||||||| ||    
T  3932872 acatcacaactttttgtcccacgtacaagttgtctaaaataccaaaata-acattttgtccctcaaaaatcgtataaaacaaaaaattattcaatgccat 3932970  T
Q  101 -aaaagtttgtcttgtattgttttgtcttgtgatgta 136  Q
     |||| |||||| |||  |||||||||||||| ||||    
T  3932971 aaaaaatttgtcctgtgctgttttgtcttgtgttgta 3933007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 15277345 - 15277447
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    ||||||||||||||| ||||||||||||||| ||| |||||| |||||||       |||  ||||||||||||||| || | |||||||||||||||||    
T  15277345 acatcacaactttttatcccacgtacaagttgtctaaaataccaaaatag-cattttgtcttccaaaaatcgtataaaacaacaaattactcaatgctat 15277443  T
Q  101 aaaa 104  Q
    ||||    
T  15277444 aaaa 15277447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 24242728 - 24242634
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatg 96  Q
    ||||||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||    
T  24242728 acatcacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatg 24242634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 2614956 - 2614825
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| |  |||||||||||||||| || |||    
T  2614956 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaataaaaaattactcaatgccataaaa 2614858  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgta 136  Q
    | |||||| ||| ||||| || |||||| ||||    
T  2614857 aatttgtcatgtgttgttctgccttgtgttgta 2614825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 17867895 - 17867764
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    |||||||||||||||||||||||| || ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| || |||    
T  17867895 cacaactttttgtcccacgtacaaattgtctaaaataccaaaatagcatttt-gtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 17867797  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgta 136  Q
    | |||||| ||| ||||| || |||||| ||||    
T  17867796 aatttgtcctgtgttgttctgccttgtgttgta 17867764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 17877678 - 17877547
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    |||||||||||||||||||||||| || ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| || |||    
T  17877678 cacaactttttgtcccacgtacaaattgtctaaaataccaaaatagcatttt-gtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 17877580  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgta 136  Q
    | |||||| ||| ||||| || |||||| ||||    
T  17877579 aatttgtcctgtgttgttctgccttgtgttgta 17877547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 29424652 - 29424743
Alignment:
Q  21 acgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaagtttgtctt 113  Q
    ||||||||||||||| ||||||||||||||       |||||||||||| |||| |||||||||||||| ||||| | ||||||||| |||||    
T  29424652 acgtacaagttatctaaaatacaaaaatagtttttt-gtccaccaaaaaacgtacaagaccaaaaattattcaataccataaaagttcgtctt 29424743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 31870169 - 31870284
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||| | ||| ||| ||||||||||||||       |||| |||||| |||||||| || |||||||| ||||||| ||||||    
T  31870169 cacaactttttgtcccacgtataggttgtctaaaatacaaaaatag-catttcgtcccccaaaactcgtataaaacaaaaaattattcaatgccataaaa 31870267  T
Q  105 gtttgtcttgtattgtt 121  Q
     |||||| ||| |||||    
T  31870268 atttgtcatgtgttgtt 31870284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 3259743 - 3259645
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||| ||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  3259743 cacaactttttatcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 3259645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 7396194 - 7396239
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||    
T  7396194 cacaactttttgtctcacgtacaagttatctaaaatacaaaaatag 7396239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 11613860 - 11613958
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| | | |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  11613860 cacaactttttgtcccacgtacaagttgtataaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 11613958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 32132449 - 32132547
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||  |||||||       |||| ||||||||||||||| || | |||||||||||||| ||||||    
T  32132449 cacaactttttgtcccacgtacaagttgtctaaaatatcaaaatag-cattttgtcccccaaaaatcgtataaaacaacaaattactcaatgccataaaa 32132547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 34176890 - 34176792
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||  ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  34176890 cacaactttttgtcccacgtacaagtagtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 34176792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 10485217 - 10485101
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||  |||||||       |||| ||||||||||||||| || |||||||| ||||||  |||||     
T  10485217 cacaactttttgtcccacgtacaagttgtctaaaatatcaaaatag-cattttgtcccccaaaaatcgtataaaacaaaaaattattcaatgtcataaat 10485119  T
Q  105 gtttgtcttgtattgttt 122  Q
     |||||| ||| ||||||    
T  10485118 atttgtcctgtgttgttt 10485101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 28068819 - 28068753
Alignment:
Q  58 gtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaagtttgtcttgtattgttttg 124  Q
    ||||||||||| | ||||||||||||||||||  |||| |||||||||||| |||| | ||||||||    
T  28068819 gtccaccaaaagtggtataagaccaaaaattatacaatactataaaagtttctcttatgttgttttg 28068753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 166992 - 167037
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||    
T  166992 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag 167037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 32614059 - 32614112
Alignment:
Q  58 gtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaagtttgtc 111  Q
    ||||||||||||||||||||||||||||||||   ||| | |||||||||||||    
T  32614059 gtccaccaaaaatcgtataagaccaaaaattatataataccataaaagtttgtc 32614112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 9902727 - 9902771
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||    
T  9902727 cacaactttttgtcccacgtacaagttgtctaaaataccaaaata 9902771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 10552785 - 10552710
Alignment:
Q  58 gtccaccaaaaatcgtataagaccaaaaattactca--atgctataaaagtttgtcttgtattgttttgtcttgtg 131  Q
    |||||||||||||||||||||| ||||||||| |||  ||   ||||||||||||||| | || ||||||||||||    
T  10552785 gtccaccaaaaatcgtataagatcaaaaattattcaatatatcataaaagtttgtcttatgttattttgtcttgtg 10552710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 17443321 - 17443277
Alignment:
Q  6 acaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    |||||||||||||||||||||||||| ||| |||||| |||||||    
T  17443321 acaactttttgtcccacgtacaagttgtctaaaataccaaaatag 17443277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 18057578 - 18057534
Alignment:
Q  6 acaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    |||||||||||||||||||||||||| ||| |||||| |||||||    
T  18057578 acaactttttgtcccacgtacaagttgtctaaaataccaaaatag 18057534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 24203422 - 24203378
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||    
T  24203422 cacaactttttgtcccacgtacaagttgtctaaaataccaaaata 24203378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 8342783 - 8342829
Alignment:
Q  155 tttgtattgtgttgttttgtcttgtgatgttttgtctagtatatact 201  Q
    |||||||||||||||||| ||||||| ||| |||||||||| |||||    
T  8342783 tttgtattgtgttgttttttcttgtgttgtattgtctagtacatact 8342829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 10324180 - 10324278
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||| |||||||||||| ||| |||||| ||||||        |||| | ||||||||||||| || |||||||||||||| | ||||||    
T  10324180 cacaactttttgtctcacgtacaagttgtctaaaataccaaaata-acattttgtccccaaaaaatcgtataaaacaaaaaattactcaatcccataaaa 10324278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 3379770 - 3379725
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    |||||||||||||| ||| |||||||| |||||||||| |||||||    
T  3379770 cacaactttttgtctcacatacaagttgtcttaaataccaaaatag 3379725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 11279188 - 11279143
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    |||||||||||||| |||||||||||| ||| |||||| |||||||    
T  11279188 cacaactttttgtctcacgtacaagttgtctaaaataccaaaatag 11279143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 11382124 - 11382079
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    |||||||||||||| |||||||||||| ||| |||||| |||||||    
T  11382124 cacaactttttgtctcacgtacaagttgtctaaaataccaaaatag 11382079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 29054416 - 29054375
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaa 46  Q
    |||||||||||||| |||||||||||| ||| ||||||||||    
T  29054416 cacaactttttgtctcacgtacaagttgtctaaaatacaaaa 29054375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 32409917 - 32409966
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||||||||  ||||||| ||| |||||| |||||||    
T  32409917 acatcacaactttttgtcccactcacaagttgtctaaaataccaaaatag 32409966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 42
Target Start/End: Original strand, 4494185 - 4494221
Alignment:
Q  6 acaactttttgtcccacgtacaagttatcttaaatac 42  Q
    |||||||||||||||||||||||||| ||| ||||||    
T  4494185 acaactttttgtcccacgtacaagttgtctaaaatac 4494221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 8177950 - 8177994
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    |||||||||||||||||||| |||||| ||| |||||| ||||||    
T  8177950 cacaactttttgtcccacgttcaagttgtctaaaataccaaaata 8177994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 14925526 - 14925570
Alignment:
Q  6 acaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||| |||||||| ||| |||||| |||||||    
T  14925526 acaactttttgtcccacttacaagttgtctaaaataccaaaatag 14925570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 32860111 - 32860067
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    |||||| ||||||| |||||||||||| ||| |||||||||||||    
T  32860111 cacaaccttttgtctcacgtacaagttttctaaaatacaaaaata 32860067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 7001865 - 7001792
Alignment:
Q  58 gtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaagtttgtcttgtattgttttgtcttgtg 131  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||| |||||| ||||||||| |||||||||    
T  7001865 gtccaccaaaaatcgtataagaccaaaaattattcaatgccataaaaatttgtcctgtattgttctgtcttgtg 7001792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 33552865 - 33552996
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| || |||    
T  33552865 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 33552963  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgta 136  Q
    | |||||| ||| |||||||| |||||| ||||    
T  33552964 aatttgtcctgtgttgttttgccttgtgttgta 33552996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 44324365 - 44324470
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| | |||||||| |||||||       |||| ||||||||||||||| || |||||||| ||||||| ||||||    
T  44324365 cacaactttttgtcccacgtacaagttgttttaaataccaaaatag-catttcgtcccccaaaaatcgtataaaacaaaaaattattcaatgccataaaa 44324463  T
Q  105 gtttgtc 111  Q
     ||||||    
T  44324464 atttgtc 44324470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 24002402 - 24002310
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgc 97  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || ||||||||||||||||    
T  24002402 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatagcatttttgtccctcaaaaatcgtataaaacaaaaaattactcaatgc 24002310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 20802550 - 20802685
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    ||||||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||| ||||| || |||||||||||||||| ||    
T  20802550 acatcacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcatataaaacaaaaaattactcaatgccat 20802648  T
Q  101 -aaaagtttgtcttgtattgttttgtcttgtgatgta 136  Q
     |||| |||||| ||| ||||| || |||||| ||||    
T  20802649 aaaaaatttgtcctgtgttgttctgccttgtgttgta 20802685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 55065356 - 55065491
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||  |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  55065356 cacaactttttgtcccacgtacaagttgtctaaaatatcaaaatagcatttt-gtccttcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 55065454  T
Q  105 gtttgtcttgtattgttttgtcttgtgatgtattatt 141  Q
     |||||| |||  |||| || |||||| |||| ||||    
T  55065455 atttgtcctgtgctgttctgccttgtgttgtactatt 55065491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 23521943 - 23521845
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  23521943 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 23521845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 43641162 - 43641064
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  43641162 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 43641064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 24210382 - 24210249
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||| ||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||| | ||||||    
T  24210382 cacaactttttatcccacgtacaagttgtctaaaataccaaaatagcatttttgtccctcaaaaatcgtataaaacaaaaaattactcaataccataaaa 24210283  T
Q  105 -gtttgtcttgtattgttttgtcttgtgatgtat 137  Q
      |||||| ||| ||||| || |||||| |||||    
T  24210282 tatttgtcatgtgttgttctgccttgtgttgtat 24210249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 56154684 - 56154553
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||| ||||| || |||||||||||||||| || |||    
T  56154684 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcatataaaacaaaaaattactcaatgccataaaa 56154586  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgta 136  Q
    | |||||| |||| |||| || |||||| ||||    
T  56154585 aatttgtcatgtactgttctgccttgtgttgta 56154553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 4325854 - 4325756
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       |||| |||||||||| |||| || |||||||||||| ||| ||||||    
T  4325854 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtcccccaaaaatcgcataaaacaaaaaattactcattgccataaaa 4325756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 9512363 - 9512461
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||| ||||| || |||||||||||||||| ||||||    
T  9512363 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcatataaaacaaaaaattactcaatgccataaaa 9512461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 37695564 - 37695673
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||| ||| ||| |||||  ||||||        |||| ||||||||||||||| || |||||||| ||||||| ||||||    
T  37695564 cacaactttttgtcccacgtacaggttgtctaaaatatcaaaata-acatttcgtcccccaaaaatcgtataaaacaaaaaattattcaatgccataaaa 37695662  T
Q  105 gtttgtcttgt 115  Q
     ||||||||||    
T  37695663 atttgtcttgt 37695673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 42870028 - 42869938
Alignment:
Q  14 ttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||| ||||| ||| ||||||||||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  42870028 ttgtcccacgtataagttgtctaaaatacaaaaatagcatttttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 42869938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 9435466 - 9435338
Alignment:
Q  1 acatcacaactttttgtcccacgtacaa-gttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgcta 99  Q
    |||||||||||||||| || |  ||||| ||||||| ||||||||||||||       ||| ||||||||| |||||||||||||||| | |||||   |    
T  9435466 acatcacaactttttgaccaatatacaaagttatctaaaatacaaaaatagcttttt-gtctaccaaaaatggtataagaccaaaaataattcaatatca 9435368  T
Q  100 taaaagtttgtcttgtattgttttgtcttg 129  Q
    |||||||||||| ||| ||||| |||||||    
T  9435367 taaaagtttgtcgtgtgttgttctgtcttg 9435338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 29616233 - 29616102
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    |||||||||||||||||||||||| || ||| |||||| ||||||        ||||   ||||||||||||| || |||||||||||||||| || |||    
T  29616233 cacaactttttgtcccacgtacaaattgtctaaaataccaaaata-acattttgtcccttaaaaatcgtataaaacaaaaaattactcaatgccataaaa 29616135  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgta 136  Q
    | |||||| ||| ||||| ||||||||| ||||    
T  29616134 aatttgtcatgtgttgttctgtcttgtgttgta 29616102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 33177055 - 33177186
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||| ||||||| ||| |||||| ||||||        |||| ||||||||||||||| ||  ||||||||||||||| ||||||    
T  33177055 cacaactttttgtcccacgcacaagttgtctaaaataccaaaata-acattttgtcccccaaaaatcgtataaaacataaaattactcaatgccataaaa 33177153  T
Q  105 -gtttgtcttgtattgttttgtcttgtgatgta 136  Q
      |||||| | | ||||| ||||||||| ||||    
T  33177154 tatttgtcctttgttgttctgtcttgtgttgta 33177186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 36743711 - 36743847
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  ||||||| |||||| || | |||||||||||||| || |||    
T  36743711 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaattgtataaaacaacaaattactcaatgccataaaa 36743809  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgtattatt 141  Q
    | ||||||||||  |||| || ||| || |||||||||    
T  36743810 aatttgtcttgtgctgttctgccttatgttgtattatt 36743847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 55593948 - 55593817
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    ||||||||||| ||||||||||||||| ||| |||||| ||||||        ||||  |||||||||||||| || |||||||||||||||| || |||    
T  55593948 cacaactttttatcccacgtacaagttgtctaaaataccaaaata-acattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 55593850  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgta 136  Q
    | ||||| ||| |||||| || |||||| ||||    
T  55593849 aatttgttttgcattgttctgccttgtgttgta 55593817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 21580093 - 21579958
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    |||||||||||||||||| ||||||||| || ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||| | ||    
T  21580093 acatcacaactttttgtctcacgtacaaattgtctaaaataccaaaatag-catgttgtccctcaaaaatcgtataaaactaaaaattactcaataccat 21579995  T
Q  101 -aaaagtttgtcttgtattgttttgtcttgtgatgta 136  Q
     |||| |||||| ||| ||||| || |||||| ||||    
T  21579994 aaaaaatttgtcctgtgttgttctgccttgtgttgta 21579958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 50727936 - 50728034
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||        ||||  |||||||||||||| || |||||||| ||||||| ||||||    
T  50727936 cacaactttttgtcccacgtacaagttgtctaaaataccaaaata-acattttgtccctcaaaaatcgtataaaacaaaaaattattcaatgccataaaa 50728034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 50735950 - 50736048
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||        ||||  |||||||||||||| || |||||||| ||||||| ||||||    
T  50735950 cacaactttttgtcccacgtacaagttgtctaaaataccaaaata-acattttgtccctcaaaaatcgtataaaacaaaaaattattcaatgccataaaa 50736048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 2725152 - 2725245
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatg 96  Q
    ||||||||||||||||||| ||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||    
T  2725152 acatcacaactttttgtcc-acgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatg 2725245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 7554980 - 7555105
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||| |||||||||||| ||| |||  | |||||||       | || ||||||||||||||| || |||||||| ||||||| ||||||    
T  7554980 cacaactttttgtctcacgtacaagttgtctaaaaatccaaaatagcatttcgg-cctccaaaaatcgtataaaacaaaaaattattcaatgccataaaa 7555078  T
Q  105 gtttgtcttgtattgttttgtcttgtg 131  Q
     |||||| |||  |||| |||||||||    
T  7555079 atttgtcgtgtgatgttctgtcttgtg 7555105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 21202802 - 21202705
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||  |||||||       |||| ||||||||||||||| || |||||||||||| ||| ||||||    
T  21202802 cacaactttttgtcccacgtacaagttgtctaaaatatcaaaatag-cattttgtcc-ccaaaaatcgtataaaacaaaaaattactcattgccataaaa 21202705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 29785560 - 29785658
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||| |||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||| ||||||| ||||||    
T  29785560 cacagctttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattattcaatgccataaaa 29785658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 38812583 - 38812538
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||    
T  38812583 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag 38812538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 40792484 - 40792435
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    |||||||||||||||||  || ||||||||||||| ||||||||||||||    
T  40792484 acatcacaactttttgtttcatgtacaagttatctaaaatacaaaaatag 40792435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 41720903 - 41720862
Alignment:
Q  8 aactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    ||||||||||||||||||||| |||||| |||||||||||||    
T  41720903 aactttttgtcccacgtacaaattatctaaaatacaaaaata 41720862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 47642514 - 47642604
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatg 96  Q
    ||||||||||||||||||||||||||| ||| |||||  |||||||       |||| ||||||||||||||| || |||||||| ||||||    
T  47642514 cacaactttttgtcccacgtacaagttgtctaaaatatcaaaatag-cattttgtcccccaaaaatcgtataaaacaaaaaattattcaatg 47642604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 138
Target Start/End: Complemental strand, 985293 - 985214
Alignment:
Q  58 gtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaagtttgtcttgtattgttttgtcttgtgatgtatt 138  Q
    ||||| |||||||| ||||||||||||||||| ||||  | |||||| |||||||| |  |||||||||||||| ||||||    
T  985293 gtccagcaaaaatcatataagaccaaaaattattcaa-accataaaaatttgtcttatgatgttttgtcttgtgttgtatt 985214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 14296654 - 14296562
Alignment:
Q  11 tttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||| ||| |||||| ||||||        |||  ||||||||||||||| || |||||||||||||||| ||||||    
T  14296654 tttttgtcccacgtacaagttgtctaaaataccaaaata-acattttgtctcccaaaaatcgtataaaacaaaaaattactcaatgccataaaa 14296562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 104
Target Start/End: Complemental strand, 14314902 - 14314810
Alignment:
Q  11 tttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||| ||| |||||| ||||||        |||  ||||||||||||||| || |||||||||||||||| ||||||    
T  14314902 tttttgtcccacgtacaagttgtctaaaataccaaaata-acattttgtctcccaaaaatcgtataaaacaaaaaattactcaatgccataaaa 14314810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 16320582 - 16320469
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||| |||  || ||||||||||||||        ||| |||||| |||||||| ||  ||||||| ||||||| ||||||    
T  16320582 cacaactttttgtcccacgtacaggttgcctaaaatacaaaaatagaatttca-tcccccaaaactcgtataaaac--aaaattattcaatgccataaaa 16320486  T
Q  105 gtttgtcttgtattgtt 121  Q
     |||||||||| |||||    
T  16320485 atttgtcttgtgttgtt 16320469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 20644319 - 20644379
Alignment:
Q  61 caccaaaaatcgtataagaccaaaaattactcaatgctataaaagtttgtcttgtattgtt 121  Q
    ||||||||||||||||| | ||||||||| ||||||| |||||||| |||| ||| |||||    
T  20644319 caccaaaaatcgtataaaatcaaaaattattcaatgcgataaaagtgtgtcatgtgttgtt 20644379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 31445895 - 31445943
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    |||||||||||||||| | ||||||||| |||||| |||||||||||||    
T  31445895 acatcacaactttttgccacacgtacaaattatctaaaatacaaaaata 31445943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 32181325 - 32181281
Alignment:
Q  6 acaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    |||||||||||||||||||||||||| ||| |||||| |||||||    
T  32181325 acaactttttgtcccacgtacaagttgtctaaaataccaaaatag 32181281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 52949783 - 52949679
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||  |||||||       |||| ||||||||||||||| | ||||||||| ||||||  ||||||    
T  52949783 cacaactttttgtcccacgtacaagttgtctaaaatatcaaaatag-cattttgtcccccaaaaatcgtataa-aacaaaaattattcaatgtcataaaa 52949686  T
Q  105 gtttgtc 111  Q
     ||||||    
T  52949685 atttgtc 52949679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 9807218 - 9807114
Alignment:
Q  6 acaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaag 105  Q
    |||||||||||||| ||||||||||| ||| |||||| |||||||       |||| ||||||||||||||| ||  ||||||| ||||||| ||| ||     
T  9807218 acaactttttgtcctacgtacaagttgtctaaaataccaaaatag-catttcgtcctccaaaaatcgtataaaacataaaattattcaatgccatacaaa 9807120  T
Q  106 tttgtc 111  Q
    ||||||    
T  9807119 tttgtc 9807114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 2629972 - 2630018
Alignment:
Q  3 atcacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    |||||||||||||||| |||||||||||| ||| |||||| ||||||    
T  2629972 atcacaactttttgtctcacgtacaagttgtctaaaataccaaaata 2630018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 42772818 - 42772724
Alignment:
Q  8 aactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaa 103  Q
    |||||||||||||||||| ||||||||| |||||| ||||||         ||| ||||||||| ||||| || |||||||||||||||| |||||    
T  42772818 aactttttgtcccacgtataagttatctaaaataccaaaata-acattttttcctccaaaaatcatataaaacaaaaaattactcaatgccataaa 42772724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 49152174 - 49152220
Alignment:
Q  58 gtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||| |||||||||||||| || |||||||||||||||| ||||||    
T  49152174 gtccatcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 49152220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 12600949 - 12600904
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    |||||||||||||| |||||||||||| ||| |||||| |||||||    
T  12600949 cacaactttttgtctcacgtacaagttgtctaaaataccaaaatag 12600904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 28115315 - 28115270
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    |||||||||||||||||| |||||||| ||| |||||| |||||||    
T  28115315 cacaactttttgtcccacatacaagttgtctaaaataccaaaatag 28115270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 37865816 - 37865771
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||| ||||||||| ||| |||||| |||||||    
T  37865816 cacaactttttgtcccatgtacaagttgtctaaaataccaaaatag 37865771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 50186591 - 50186546
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||| |||||| |||||||| ||| ||||||||||||||    
T  50186591 cacaactttttatcccacatacaagttgtctaaaatacaaaaatag 50186546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 50729565 - 50729610
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    |||||||||||||| |||||||||||| ||| |||||| |||||||    
T  50729565 cacaactttttgtctcacgtacaagttgtctaaaataccaaaatag 50729610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 1231374 - 1231338
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaata 41  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  1231374 cacaactttttgtcccacgtacaagttgtctaaaata 1231338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 3649699 - 3649655
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    ||||||||||||||||||||||||||| ||| ||| || ||||||    
T  3649699 cacaactttttgtcccacgtacaagttgtctaaaacaccaaaata 3649655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 141
Target Start/End: Complemental strand, 29661387 - 29661251
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    ||||||||||| ||||||||||||||||||| |||||| |||||||       ||||  |||||||||||||| || ||||||||||||||||||| |||    
T  29661387 cacaactttttatcccacgtacaagttatctaaaataccaaaatagcatttt-gtcccacaaaaatcgtataaaacaaaaaattactcaatgctataaaa 29661289  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgtattatt 141  Q
    | |||||||||| ||||| || |||||| |||| ||||    
T  29661288 aatttgtcttgtgttgttctgccttgtgttgtactatt 29661251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 46633761 - 46633630
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| || |||    
T  46633761 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatagcatttt-gtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 46633663  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgta 136  Q
    | |||||||||| ||||| || |||||| ||||    
T  46633662 aatttgtcttgtgttgttctgccttgtgttgta 46633630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 34117520 - 34117392
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    ||||||||| ||||||| ||| ||||||||| ||| |||| | |||||||       |||| ||||||||||||||| || |||||||| ||||||| ||    
T  34117520 acatcacaattttttgttccatgtacaagttgtctaaaatgccaaaatagcatttc-gtcccccaaaaatcgtataaaacgaaaaattattcaatgccat 34117422  T
Q  101 aaaagtttgtcttgtattgttttgtcttgt 130  Q
    |||| |||||||||| ||||| ||||||||    
T  34117421 aaaaatttgtcttgtgttgttctgtcttgt 34117392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 11321916 - 11322047
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| || |||    
T  11321916 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 11322014  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgta 136  Q
    | |||||| |||| |||| || |||||| ||||    
T  11322015 aatttgtcatgtactgttctgccttgtgttgta 11322047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 21784935 - 21784836
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       |||| ||||||||||||||| ||  ||||||||||||||| ||||||    
T  21784935 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtcctccaaaaatcgtataaaacataaaattactcaatgccataaaa 21784837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 29372863 - 29372925
Alignment:
Q  59 tccaccaaaaatcgtataagaccaaaaattactcaatgctataaaagtttgtcttgtattgtt 121  Q
    ||||||||||||| ||||||||||||||||| | ||| | |||||||||||||||||||||||    
T  29372863 tccaccaaaaatcatataagaccaaaaattatttaataccataaaagtttgtcttgtattgtt 29372925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 3922734 - 3922832
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||||||| |||||| |||||||       ||||  |||||||||||||| || ||||| |||||||||| ||||||    
T  3922734 cacaactttttgtcccacgtacaagttatctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaaatactcaatgccataaaa 3922832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 10932588 - 10932686
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  10932588 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 10932686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 40753219 - 40753121
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  40753219 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 40753121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 47947824 - 47947726
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  47947824 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 47947726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 47953254 - 47953156
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  47953254 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 47953156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 18386589 - 18386456
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||  || |||    
T  18386589 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgtcataaaa 18386491  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgtatt 138  Q
    | |||||| ||| ||||| || |||||| ||||||    
T  18386490 aatttgtcatgtgttgttctgccttgtgttgtatt 18386456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 44748758 - 44748661
Alignment:
Q  6 acaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||||||||||||||| ||| |||||| |||||||       |||| ||||||||||||||| || |||||||||||| ||| ||||||    
T  44748758 acaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtcccccaaaaatcgtataaaacaaaaaattactcattgccataaaa 44748661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 32873800 - 32873931
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    |||||||||||||| |||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| || |||    
T  32873800 cacaactttttgtctcacgtacaagttgtctgaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 32873898  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgta 136  Q
    | |||||| ||| ||||| || |||||| ||||    
T  32873899 aatttgtcatgtgttgttctgccttgtgttgta 32873931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 41211231 - 41211330
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||        |||   ||||||||||||| || |||||||||||||||| ||||||    
T  41211231 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatagcatttttatccctaaaaaatcgtataaaacaaaaaattactcaatgccataaaa 41211330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 43158717 - 43158848
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    ||||||||||||||||||||||||||| ||| ||| |  |||||||       ||||  |||||||||||||| || |||||||||||||||| || |||    
T  43158717 cacaactttttgtcccacgtacaagttgtctaaaacatcaaaatagcatttt-gtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 43158815  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgta 136  Q
    | |||||| |||| |||| ||||||||| ||||    
T  43158816 aatttgtcctgtactgttctgtcttgtgttgta 43158848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 26371840 - 26371938
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||| ||||||| ||||||    
T  26371840 cacaactttttgtcccacgtacaagttgtctaaaatactaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattattcaatgccataaaa 26371938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 26994256 - 26994354
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||   ||||||||||||| || |||||||||||||||| ||||||    
T  26994256 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctaaaaaatcgtataaaacaaaaaattactcaatgccataaaa 26994354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 29992729 - 29992813
Alignment:
Q  8 aactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaa 94  Q
    ||||||||||| |||||||||||||||| ||||||||||  |        |||||||||||||||||||||||||||||||| ||||    
T  29992729 aactttttgtctcacgtacaagttatctaaaatacaaaataa--ttttttgtccaccaaaaatcgtataagaccaaaaattattcaa 29992813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 36769600 - 36769698
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       |||   |||||||||||||| || |||||||||||||||| ||||||    
T  36769600 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtctctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 36769698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 41665602 - 41665651
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    |||||||||||||||||| |||||||||||| ||| ||||||||||||||    
T  41665602 acatcacaactttttgtctcacgtacaagttgtctaaaatacaaaaatag 41665651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 26652930 - 26652825
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||  |||||||       |||| ||||||||||||||| || |||||||| ||||||  ||||||    
T  26652930 cacaactttttgtcccacgtacaagttgtctaaaatatcaaaatag-cattttgtccgccaaaaatcgtataaaacaaaaaattattcaatgtcataaaa 26652832  T
Q  105 gtttgtc 111  Q
     ||||||    
T  26652831 atttgtc 26652825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 115
Target Start/End: Original strand, 34295435 - 34295544
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||  |||||||       |||| ||||||||| ||||| || |||||||| ||||||  ||||||    
T  34295435 cacaactttttgtcccacgtacaagttgtctaaaatatcaaaatag-cattttgtcccccaaaaatcatataaaacaaaaaattattcaatgtcataaaa 34295533  T
Q  105 gtttgtcttgt 115  Q
     ||||||||||    
T  34295534 atttgtcttgt 34295544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 9913593 - 9913484
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    ||||||||||||||| ||||||||||| ||| ||| |||||| ||||||        |||| ||||||||||||||| || |||||||| ||||| | ||    
T  9913593 acatcacaactttttttcccacgtacaggttgtctaaaataccaaaata-acatttcgtcccccaaaaatcgtataaaactaaaaattattcaattccat 9913495  T
Q  101 aaaagtttgtc 111  Q
    |||| ||||||    
T  9913494 aaaaatttgtc 9913484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 9927281 - 9927172
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    ||||||||||||||| ||||||||||| ||| ||| |||||| ||||||        |||| ||||||||||||||| || |||||||| ||||| | ||    
T  9927281 acatcacaactttttttcccacgtacaggttgtctaaaataccaaaata-acatttcgtcccccaaaaatcgtataaaactaaaaattattcaattccat 9927183  T
Q  101 aaaagtttgtc 111  Q
    |||| ||||||    
T  9927182 aaaaatttgtc 9927172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 34519572 - 34519527
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||||||    
T  34519572 cacaactttttgtcccaggtacaagttgtctaaaatacaaaaatag 34519527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 329538 - 329409
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    |||||||||||||||||||||||||||||||  || ||| || |||||||       |||| ||||||||| ||||| || | |||||| ||||| | ||    
T  329538 acatcacaactttttgtcccacgtacaagttgcctaaaacaccaaaatag-cattttgtcccccaaaaatcatataaaacaagaaattattcaataccat 329440  T
Q  101 aaaagtttgtcttgtattgttttgtcttgtg 131  Q
    |||| |||||| |||| |||| || ||||||    
T  329439 aaaaatttgtcatgtactgttatgccttgtg 329409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 18470745 - 18470650
Alignment:
Q  8 aactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||||||||||||| ||| |||||| ||||||        ||||  |||||||| ||||| || |||||||||||||||| ||||||    
T  18470745 aactttttgtcccacgtacaagttgtctaaaataccaaaata-acattttgtccctcaaaaatcatataaaacaaaaaattactcaatgccataaaa 18470650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 22724564 - 22724607
Alignment:
Q  7 caactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||||    
T  22724564 caactttatgtcccacgtacaagttgtctaaaatacaaaaatag 22724607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 136
Target Start/End: Original strand, 30849329 - 30849408
Alignment:
Q  58 gtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaaagtttgtcttgtattgttttgtcttgtgatgta 136  Q
    |||| ||||||||||||||| || |||||||||||||||| || ||||  ||||| ||| ||||| ||||||||| ||||    
T  30849329 gtcccccaaaaatcgtataaaacaaaaaattactcaatgccataaaaaaattgtcctgtgttgttctgtcttgtgttgta 30849408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 1363704 - 1363586
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    |||||||||||||||||| |||||||| ||| ||  ||||||||||||||       || | |||||||| |||||| || |||||||| ||||||| ||    
T  1363704 acatcacaactttttgtctcacgtacaggttgtcaaaaatacaaaaatag-catttcgtac-ccaaaaattgtataaaacaaaaaattattcaatgccat 1363607  T
Q  101 aaaagtttgtcttgtattgtt 121  Q
    |||| |||||| ||| |||||    
T  1363606 aaaaatttgtcatgtgttgtt 1363586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 29455937 - 29455995
Alignment:
Q  66 aaaatcgtataagaccaaaaattactcaatgctataaaagtttgtcttgtattgttttg 124  Q
    |||||| |||||||||||| |||| ||||| | ||||||||||||| ||| ||||||||    
T  29455937 aaaatcatataagaccaaatattattcaataccataaaagtttgtcatgtgttgttttg 29455995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 37967042 - 37967008
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatct 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  37967042 acatcacaactttttgttccacgtacaagttatct 37967008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 26910441 - 26910486
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    |||||||||||||| |||||||||||| ||  ||||||||||||||    
T  26910441 cacaactttttgtcacacgtacaagttgtcaaaaatacaaaaatag 26910486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 120
Target Start/End: Original strand, 47316787 - 47316844
Alignment:
Q  64 caaaaatcgtataagaccaaaaattactcaatgctat-aaaagtttgtcttgtattgt 120  Q
    |||||||||||||| || |||||||||||||||| || |||| |||||||||| ||||    
T  47316787 caaaaatcgtataaaacaaaaaattactcaatgccataaaaaatttgtcttgtgttgt 47316844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 1870199 - 1870163
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaata 41  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  1870199 cacaactttttgtcccacgtacaagttgtctaaaata 1870163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 39788257 - 39788154
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    ||||||||||||||||||||||||||||||| ||| |||||| ||||||        |||| ||||||||||||||| || |||||||||||||| | ||    
T  39788257 acatcacaactttttgtcccacgtacaagttgtctaaaatactaaaataacatttttgtcccccaaaaatcgtataaaacaaaaaattactcaataccat 39788158  T
Q  101 aaaa 104  Q
    ||||    
T  39788157 aaaa 39788154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 4818176 - 4818302
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||   ||||||||||||| || |||||||||||||||| || |||    
T  4818176 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctaaaaaatcgtataaaacaaaaaattactcaatgccataaaa 4818274  T
Q  104 agtttgtcttgtattgttttgtcttgtg 131  Q
    | |||||||||| ||||| || ||||||    
T  4818275 aatttgtcttgtgttgttctgccttgtg 4818302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 5571680 - 5571776
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||| ||||||||||| ||| |||||| |||||||       |||| ||||||||||||||| || |||||||||||||||| ||||||    
T  5571680 cacaactttttgtccaacgtacaagttgtctaaaataccaaaatagcatt---gtcccccaaaaatcgtataaaacaaaaaattactcaatgccataaaa 5571776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 17031217 - 17031134
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaatta 89  Q
    |||||||||| |||||||||||||||||| | ||||||||||||||       |||||| ||||||| |||||||||||||||||    
T  17031217 cacaacttttcgtcccacgtacaagttatttaaaatacaaaaatag-ctttttgtccacaaaaaatcatataagaccaaaaatta 17031134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 28090556 - 28090654
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||        ||||  |||||||||||||| || ||||||||||||||  |||||||    
T  28090556 cacaactttttgtcccacgtacaagttgtctaaaatacaaaaata-acattttgtccctcaaaaatcgtataaaacaaaaaattactcaataatataaaa 28090654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 40182528 - 40182393
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    ||||||||||||||||||||| ||||||||| ||| |||||| |||||||       |||   |||||||||||||| || |||||||||||||||| ||    
T  40182528 acatcacaactttttgtcccatgtacaagttgtctaaaataccaaaatag-cattttgtctctcaaaaatcgtataaaacaaaaaattactcaatgccat 40182430  T
Q  101 -aaaagtttgtcttgtattgttttgtcttgtgatgta 136  Q
     |||| |||||| |||  ||||||| |||||| ||||    
T  40182429 aaaaaatttgtcatgtgctgttttgccttgtgttgta 40182393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 3735417 - 3735312
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||        |||| ||||||||||||||| || |||||||| ||||||  ||||||    
T  3735417 cacaactttttgtcccacgtacaagttgtctaaaataccaaaata-acattttgtcctccaaaaatcgtataaaacaaaaaattattcaatgtcataaaa 3735319  T
Q  105 gtttgtc 111  Q
     ||||||    
T  3735318 atttgtc 3735312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 7523236 - 7523187
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||||||||||||||||| ||| |||||| |||||||    
T  7523236 acatcacaactttttgtcccacgtacaagttgtctaaaataccaaaatag 7523187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 31770627 - 31770725
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||| ||||| || |||||||||||||||| ||||||    
T  31770627 cacaactttttgtcccacgtacaagttgtctgaaataccaaaatag-cattttgtccctcaaaaatcatataaaacaaaaaattactcaatgccataaaa 31770725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 58 - 131
Target Start/End: Complemental strand, 32313846 - 32313773
Alignment:
Q  58 gtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaagtttgtcttgtattgttttgtcttgtg 131  Q
    ||||| |||||||||||||||| ||||||||| ||||| ||||| || |||||| ||| ||||| |||||||||    
T  32313846 gtccagcaaaaatcgtataagatcaaaaattaatcaatactatacaaatttgtcatgtgttgttctgtcttgtg 32313773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 32528775 - 32528677
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||| ||||||| ||||||    
T  32528775 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattattcaatgccataaaa 32528677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 8561014 - 8561132
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    ||||||||||||||||| ||| ||||||||| ||| |||||| ||||||        |||| ||||||||||||||| || |||||||| ||||||| ||    
T  8561014 acatcacaactttttgttccaggtacaagttgtctaaaataccaaaata-acatttcgtcc-ccaaaaatcgtataaaacaaaaaattaatcaatgccat 8561111  T
Q  101 aaaagtttgtcttgtattgtt 121  Q
    |||| |||||| ||| |||||    
T  8561112 aaaaatttgtcatgttttgtt 8561132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 2351740 - 2351642
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||        ||||  ||||||||||| || || |||||||||||||||| ||||||    
T  2351740 cacaactttttgtcccacgtacaagttgtctaaaataccaaaata-acattttgtccctcaaaaatcgtacaaaacaaaaaattactcaatgccataaaa 2351642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 6284334 - 6284433
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatac-aaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaa 103  Q
    ||||||||||||||||||||||||||| ||  |||||| ||||||||       ||||  |||||||||||||| || |||||||||||||||| |||||    
T  6284334 cacaactttttgtcccacgtacaagttgtccaaaataccaaaaatagcatttt-gtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaa 6284432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 7208266 - 7208364
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||| |||||||||||| ||| |||||| |||||||        |||  |||||||||||||| || |||||||||||||||| ||||||    
T  7208266 cacaactttttgtctcacgtacaagttgtctaaaataccaaaatagcattttgttcc-tcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 7208364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 31644506 - 31644391
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       |||| | ||||||| ||||| ||  ||||||| ||||||  ||||||    
T  31644506 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtcccctaaaaatcatataaaacataaaattattcaatgtcataaaa 31644408  T
Q  105 gtttgtcttgtattgtt 121  Q
     |||||||||| |||||    
T  31644407 atttgtcttgtgttgtt 31644391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 39918567 - 39918469
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||| |||||||||||| ||| |||||| ||||||        |||| ||||||||||||||| ||  ||||||||||||| ||||||||    
T  39918567 cacaactttttgtctcacgtacaagttgtctaaaataccaaaata-acattttgtcccccaaaaatcgtataaaacataaaattactcaatactataaaa 39918469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 21739197 - 21739242
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||    
T  21739197 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag 21739242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 29241438 - 29241340
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||||||||||||||||  || |||||  |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  29241438 cacaactttttgtcccacgtacaagttggctaaaatatcaaaatagcatttt-gtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 29241340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 32093017 - 32093062
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    |||||||||||||||||||||||| |||||| |||||| |||||||    
T  32093017 cacaactttttgtcccacgtacaaattatctaaaataccaaaatag 32093062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 34794951 - 34794902
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||||||||||| ||||| ||| |||||| |||||||    
T  34794951 acatcacaactttttgtcccacgtataagttgtctaaaataccaaaatag 34794902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 553457 - 553413
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||    
T  553457 cacaactttttgtcccacgtacaagttgtctaaaataccaaaata 553413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 700637 - 700681
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||    
T  700637 cacaactttttgtctcacgtacaagttatctaaaataccaaaata 700681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 4689734 - 4689778
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    |||||||||||||||||||||||||||  || |||||||||||||    
T  4689734 cacaactttttgtcccacgtacaagttgcctaaaatacaaaaata 4689778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 7770315 - 7770359
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    |||||||||||||||||||||||||||  || |||||||||||||    
T  7770315 cacaactttttgtcccacgtacaagttgcctaaaatacaaaaata 7770359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 24036294 - 24036246
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    ||||||||||||||| ||||||||||||||| ||| |||||| ||||||    
T  24036294 acatcacaactttttatcccacgtacaagttgtctaaaataccaaaata 24036246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 31880108 - 31880243
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    ||||||||||| ||||||| ||||||||||| ||| |||||| |||||||       |||| |||| |||||||||| || |||||||| ||||||  ||    
T  31880108 acatcacaactatttgtcctacgtacaagttgtctaaaataccaaaatag-cattttgtcccccaacaatcgtataatacaaaaaattattcaatgtcat 31880206  T
Q  101 -aaaagtttgtcttgtattgttttgtcttgtgatgta 136  Q
     |||| |||||| |||| |||| || |||||| ||||    
T  31880207 aaaaaatttgtcatgtactgttctgccttgtgttgta 31880243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 40489397 - 40489299
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||||||| |||||||| ||| |||||| ||||||        ||||  ||||||| |||||| || |||||||||||||||| ||||||    
T  40489397 cacaactttttgtcccacatacaagttgtctaaaataccaaaata-acattttgtccctcaaaaattgtataaaacaaaaaattactcaatgccataaaa 40489299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 11963401 - 11963356
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    |||||||||||||||||||| |||||| ||| |||||| |||||||    
T  11963401 cacaactttttgtcccacgtgcaagttgtctaaaataccaaaatag 11963356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 136
Target Start/End: Original strand, 23091398 - 23091471
Alignment:
Q  64 caaaaatcgtataagaccaaaaattactcaatgctataa-aagtttgtcttgtattgttttgtcttgtgatgta 136  Q
    |||||||||||||| || ||| |||||||||||| |||| || |||||||||| ||||| | ||||||| ||||    
T  23091398 caaaaatcgtataaaacaaaacattactcaatgccataagaaatttgtcttgtgttgttctatcttgtgttgta 23091471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 8136897 - 8136853
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    ||||||||||||||| ||||||||||| ||| |||||| ||||||    
T  8136897 cacaactttttgtcctacgtacaagttgtctaaaataccaaaata 8136853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 12572 - 12670
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||||||||||    
T  12572 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgctataaaa 12670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 18090 - 18188
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||||||||||    
T  18090 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgctataaaa 18188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 16386927 - 16386825
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    ||||||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||    
T  16386927 acatcacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccat 16386829  T
Q  101 aaaa 104  Q
    ||||    
T  16386828 aaaa 16386825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 131
Target Start/End: Complemental strand, 4895407 - 4895337
Alignment:
Q  61 caccaaaaatcgtataagaccaaaaattactcaatgctataaaagtttgtcttgtattgttttgtcttgtg 131  Q
    |||||||||||||||||||| |||| ||| ||||| ||||||| |||||| |||| |||||||||||||||    
T  4895407 caccaaaaatcgtataagactaaaacttattcaatactataaacgtttgtattgtgttgttttgtcttgtg 4895337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 844829 - 844927
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  844829 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 844927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 1601242 - 1601116
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    |||||||||||||||||| |||||||| ||| |||||| |||||||       ||||||||||||||||| || || |||||||||||| ||| || |||    
T  1601242 cacaactttttgtcccacatacaagttgtctaaaataccaaaatagcatttt-gtccaccaaaaatcgtacaaaacaaaaaattactcattgccataaaa 1601144  T
Q  104 agtttgtcttgtattgttttgtcttgtg 131  Q
    | |||||||||| ||||| || ||||||    
T  1601143 aatttgtcttgtgttgttctgccttgtg 1601116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 16437431 - 16437321
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||  |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  16437431 cacaactttttgtcccacgtacaagttgtctaaaatatcaaaatagcatttt-gtccttcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 16437333  T
Q  105 gtttgtcttgta 116  Q
     |||||| ||||    
T  16437332 atttgtcctgta 16437321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 31004201 - 31004096
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       |||| ||||||||| ||||| || |||||||| ||||||| ||||||    
T  31004201 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-tatttcgtcccccaaaaatcctataaaacaaaaaattattcaatgccataaaa 31004103  T
Q  105 gtttgtc 111  Q
     ||||||    
T  31004102 atttgtc 31004096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 45490980 - 45491113
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctata-aa 103  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||| ||    
T  45490980 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccatacaa 45491078  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgtatt 138  Q
    | |||||| |||  |||| || |||||| ||||||    
T  45491079 aatttgtcatgtgctgttctgccttgtgttgtatt 45491113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 6711151 - 6711282
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    ||||| ||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| || |||    
T  6711151 cacaattttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 6711249  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgta 136  Q
    | ||||||||||  |||| || |||||| ||||    
T  6711250 aatttgtcttgtgctgttctgccttgtgttgta 6711282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 7183987 - 7183856
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    ||||||||||||||| ||||||||||| ||| |||||| || ||||       |||   |||||||||||||| || |||||||||||||||| || |||    
T  7183987 cacaactttttgtcctacgtacaagttgtctaaaataccaatatagtatttt-gtctctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 7183889  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgta 136  Q
    | |||||| ||||||||| ||||||||| ||||    
T  7183888 aatttgtcctgtattgttctgtcttgtgttgta 7183856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 12890307 - 12890209
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| | |||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  12890307 cacaactttttgtcccacgtacaagttgtctaagataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 12890209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 16451196 - 16451098
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||||||| |||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  16451196 cacaactttttgtcccacatacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 16451098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 17888017 - 17887883
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||          || ||||||||||||||| || | |||||||||||||| || |||    
T  17888017 cacaactttttgtcccacgtacaagttgtctaaaataccaaaataacattttgtccccccaaaaatcgtataaaacaacaaattactcaatgccataaaa 17887918  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgtatt 138  Q
    | |||||| ||| ||||| || |||||| ||||||    
T  17887917 aatttgtcatgtgttgttctgccttgtgttgtatt 17887883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 28340408 - 28340506
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||| |||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  28340408 cacaactttttgtctcacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 28340506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 42510594 - 42510496
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||| ||||||| ||||||    
T  42510594 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattattcaatgccataaaa 42510496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 50540413 - 50540315
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||       |||| ||||||||| ||||| || | |||||||||||||| ||||||    
T  50540413 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtcccccaaaaatcatataaaacaacaaattactcaatgccataaaa 50540315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 25539924 - 25539819
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||||||| |||||||| | |||||||| |||||||       |||| ||||||||||||||| || |||||||| |||| || ||||||    
T  25539924 cacaactttttgtcccacctacaagttgttttaaataccaaaatag-catttcgtcccccaaaaatcgtataaaacaaaaaattattcaaagccataaaa 25539826  T
Q  105 gtttgtc 111  Q
     ||||||    
T  25539825 atttgtc 25539819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 130
Target Start/End: Original strand, 30798848 - 30798920
Alignment:
Q  58 gtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaagtttgtcttgtattgttttgtcttgt 130  Q
    |||||||||||||||||||||||||||||||| |||||   |||||| |||||  | ||||||| ||||||||    
T  30798848 gtccaccaaaaatcgtataagaccaaaaattattcaatatcataaaattttgttatatattgttctgtcttgt 30798920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 30105788 - 30105883
Alignment:
Q  8 aactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||| ||||| ||||||    
T  30105788 aactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattacttaatgccataaaa 30105883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 35387416 - 35387514
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||| ||||||||||||| ||| |||||| |||||||        |||  |||||||||||||| || |||||||||||||||| ||||||    
T  35387416 cacaactttttgttccacgtacaagttgtctaaaataccaaaatagcatttta-tccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 35387514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 44738143 - 44738244
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    ||||||||||||||||||||||||||||||| ||| |||||  |||||||        | |  |||||||||||||| || |||||||||||||||| ||    
T  44738143 acatcacaactttttgtcccacgtacaagttgtctaaaatagcaaaatagttttta--ttcctcaaaaatcgtataaaacaaaaaattactcaatgccat 44738240  T
Q  101 aaaa 104  Q
    ||||    
T  44738241 aaaa 44738244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 1351540 - 1351585
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||    
T  1351540 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag 1351585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 16476260 - 16476305
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||    
T  16476260 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag 16476305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 24339744 - 24339840
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||| ||||||||||||||| ||| |||||| |||||||       |||| ||||| ||||||||| || |||||||| ||||||| ||||||    
T  24339744 cacaactttttttcccacgtacaagttgtctaaaataccaaaatag---cattgtcccccaaacatcgtataaaacaaaaaattattcaatgccataaaa 24339840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 26118320 - 26118418
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||| ||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||| ||||||| ||||||    
T  26118320 cacaactttttgtcccacgtaaaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattattcaatgccataaaa 26118418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 46447737 - 46447688
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||| ||||||||||||||||| |||||  |||||||    
T  46447737 acatcacaactttttgttccacgtacaagttatctaaaatatcaaaatag 46447688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 51264564 - 51264466
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| | | |||||| |||||||       ||||   ||||||||||||| || |||||||||||||||| ||||||    
T  51264564 cacaactttttgtcccacgtacaagttgtttaaaatactaaaatag-cattttgtcctttaaaaatcgtataaaacaaaaaattactcaatgccataaaa 51264466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 26764900 - 26764944
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||    
T  26764900 cacaactttttgtcccacgtacaagttgtctaaaataccaaaata 26764944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 45658890 - 45658785
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||||||| |||||||| | |||||||| |||||||       |||| ||||||||| ||||| || |||||||| |||| || ||||||    
T  45658890 cacaactttttgtcccacctacaagttgttttaaataccaaaatag-catttcgtcccccaaaaatcatataaaacaaaaaattattcaaagccataaaa 45658792  T
Q  105 gtttgtc 111  Q
     ||||||    
T  45658791 atttgtc 45658785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 50382508 - 50382552
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    ||||||||||||||||||||||||||| ||| ||| |||||||||    
T  50382508 cacaactttttgtcccacgtacaagttgtctaaaacacaaaaata 50382552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 38663201 - 38663086
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||  ||||||        ||||  |||||||||||||| || |||||||| ||||||  ||||||    
T  38663201 cacaactttttgtcccacgtacaagttgtctaaaatatcaaaata-acattttgtccctcaaaaatcgtataaaacaaaaaattattcaatgtcataaaa 38663103  T
Q  105 gtttgtcttgtattgtt 121  Q
     |||||| ||| |||||    
T  38663102 atttgtcctgtgttgtt 38663086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 180
Target Start/End: Complemental strand, 4895375 - 4895337
Alignment:
Q  142 aataccataaaagtttgtattgtgttgttttgtcttgtg 180  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  4895375 aatactataaacgtttgtattgtgttgttttgtcttgtg 4895337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 131
Target Start/End: Original strand, 51703327 - 51703393
Alignment:
Q  66 aaaatcgtataagaccaaaaattactcaatgctat-aaaagtttgtcttgtattgttttgtcttgtg 131  Q
    ||||| |||||| || |||||||||||||||| || |||| |||||| |||||||||||| ||||||    
T  51703327 aaaatggtataaaacaaaaaattactcaatgccataaaaaatttgtcatgtattgttttgccttgtg 51703393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 2761661 - 2761774
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||| |||||||| || |||||| |||||| ||||||||||||||       ||| || ||||||| ||||| ||||||||||| ||||| ||||||||    
T  2761661 cacaattttttgtctcaagtacaaattatctaaaatacaaaaatagattttt-gtcaac-aaaaatcatataaaaccaaaaattattcaatactataaaa 2761758  T
Q  105 gtttgtcttgtattgt 120  Q
    || |||| ||| ||||    
T  2761759 gtctgtcatgtgttgt 2761774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 41967954 - 41967999
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    |||||||||||||| |||||||||||| ||| |||||| |||||||    
T  41967954 cacaactttttgtctcacgtacaagttgtctaaaataccaaaatag 41967999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 6029406 - 6029450
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    ||||||||||||||||||||||||||| ||| ||| || ||||||    
T  6029406 cacaactttttgtcccacgtacaagttgtctaaaacaccaaaata 6029450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 16643287 - 16643331
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    |||||||||||||||||| |||| ||| ||| |||||||||||||    
T  16643287 cacaactttttgtcccacatacaggttgtctaaaatacaaaaata 16643331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 46154969 - 46154925
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    |||||||||||||||||| |||||||| ||| |||||| ||||||    
T  46154969 cacaactttttgtcccacttacaagttgtctaaaataccaaaata 46154925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 51703268 - 51703312
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    |||||||||||||||||| |||| ||| ||| |||||||||||||    
T  51703268 cacaactttttgtcccacctacatgttgtctaaaatacaaaaata 51703312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 118
Target Start/End: Original strand, 7503 - 7610
Alignment:
Q  11 tttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaagtttgt 110  Q
    |||||||| ||||||| |||| ||| |||||| |||||||       |||||  ||||||  ||||||||||||||||| ||||| ||||||||||||||    
T  7503 tttttgtctcacgtacgagttgtctaaaataccaaaatagattttttgtccattaaaaattatataagaccaaaaattattcaatactataaaagtttgt 7602  T
Q  111 cttgtatt 118  Q
    ||||||||    
T  7603 cttgtatt 7610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 32497979 - 32497877
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    ||||||||||||||||||||||||||||||| ||| |||||| ||||||        ||||  |||||||||||||| || |||||||||||||||| ||    
T  32497979 acatcacaactttttgtcccacgtacaagttgtctaaaataccaaaata-acattttgtccttcaaaaatcgtataaaacaaaaaattactcaatgccat 32497881  T
Q  101 aaaa 104  Q
    ||||    
T  32497880 aaaa 32497877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 11114936 - 11114807
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    ||||||||||||||||||||||| ||||||| ||| |||| | |||||||       |||| | || |||||||||| || |||||||| ||||||| ||    
T  11114936 acatcacaactttttgtcccacgcacaagttgtctaaaattccaaaatag-tatttcgtccgctaacaatcgtataaaacgaaaaattattcaatgccat 11114838  T
Q  101 aaaagtttgtcttgtattgttttgtcttgtg 131  Q
    |||| ||| |||| ||||||| |||||||||    
T  11114837 aaaaatttttcttatattgttctgtcttgtg 11114807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 16177913 - 16178036
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||| |||||||||||| ||| |||||| ||||| |       |||| ||||||||||||||| ||  ||||||| ||||||||||||||    
T  16177913 cacaactttttgtctcacgtacaagttgtctaaaataccaaaat-ggaatttcgtcccccaaaaatcgtataaaac--aaaattattcaatgctataaaa 16178009  T
Q  105 gtttgtcttgtattgttttgtcttgtg 131  Q
     |||||| ||| ||||| | |||||||    
T  16178010 atttgtcgtgtgttgttctatcttgtg 16178036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 17540775 - 17540676
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaata-caaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaa 103  Q
    ||||||||||||||||||||||||||| ||| ||||| |||||||||       ||||  |||||||||||||| || |||||||||||||||| |||||    
T  17540775 cacaactttttgtcccacgtacaagttgtctaaaataccaaaaatag-tattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaa 17540677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 5278864 - 5278962
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||| ||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  5278864 cacaattttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccttcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 5278962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 30798515 - 30798564
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||| ||||||||||||||||||| |||||| |||||||    
T  30798515 acatcacaactttttatcccacgtacaagttatctaaaataccaaaatag 30798564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 34338870 - 34338772
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||| ||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  34338870 cacaactttttgtcccacgcacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 34338772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 38993101 - 38993146
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||    
T  38993101 cacaactttttgtcccacgtacaagttgtctaaaatacaaaaatag 38993146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 33889307 - 33889259
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    ||||||||||||||||||||||||||||||| ||| |||||| ||||||    
T  33889307 acatcacaactttttgtcccacgtacaagttgtctaaaataccaaaata 33889259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 2645116 - 2645214
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||||||| |||||||| ||| |||||| |||||||        |||  |||||||||||||| || |||||||||||||||| ||||||    
T  2645116 cacaactttttgtcccacatacaagttgtctaaaataccaaaatagcattttgttcc-tcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 2645214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 7258957 - 7258858
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||| |||||||||||| ||| |||||| ||||||        ||||  ||||||| |||||| || |||||||||||||||| ||||||    
T  7258957 cacaactttttgtctcacgtacaagttgtctaaaataccaaaataacatttttgtccctcaaaaattgtataaaacaaaaaattactcaatgccataaaa 7258858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 7761603 - 7761693
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatg 96  Q
    |||||||||||||| |||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||    
T  7761603 cacaactttttgtctcacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatg 7761693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 9717284 - 9717239
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||    
T  9717284 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag 9717239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 9732960 - 9733058
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||  |||||||       ||||  |||||||||||||| || |||||||| ||||||| ||||||    
T  9732960 cacaactttttgtcccacgtacaagttgtctaaaatatcaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattattcaatgccataaaa 9733058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 16104334 - 16104236
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||| ||||||||| || ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  16104334 cacaactttttgtctcacgtacaaattgtctaaaataccaaaatagcatttt-gtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 16104236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 19513719 - 19513764
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||    
T  19513719 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag 19513764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 30326361 - 30326459
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||| |||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||||| | ||||||    
T  30326361 cacaactttttgtctcacgtacaagttgtctaaaataccaaaatag-tattttgtccctcaaaaatcgtataaaacaaaaaattactcaattccataaaa 30326459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 35114845 - 35114747
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||| ||||||||||||||||||||| ||| |||||| |||||||       ||||  |||||||||||||| || |||||||||||| ||| ||||||    
T  35114845 cacaattttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcattgccataaaa 35114747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 138
Target Start/End: Complemental strand, 42706419 - 42706285
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagac-caaaaattactcaatgctat-aa 102  Q
    |||||||||||||||||| |||||||| ||| |||||| |||||||       ||||  |||||||||||||| ||  |||||||||||||||| || ||    
T  42706419 cacaactttttgtcccacatacaagttgtctaaaataccaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaaattactcaatgccataaa 42706321  T
Q  103 aagtttgtcttgtattgttttgtcttgtgatgtatt 138  Q
    || |||||| |||  |||| ||||||||| ||||||    
T  42706320 aaatttgtcctgtgctgttctgtcttgtgttgtatt 42706285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 44284689 - 44284591
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||| |||||||||||| ||| |||||  |||||||       ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  44284689 cacaactttttgtctcacgtacaagttgtctaaaataacaaaatagcatttt-gtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 44284591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 13829502 - 13829454
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    ||||||||||||||||||||| ||||||||||||| ||| || ||||||    
T  13829502 acatcacaactttttgtcccaggtacaagttatctaaaacaccaaaata 13829454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 26418983 - 26418939
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||    
T  26418983 cacaactttttgtcccacgtacaagttgtctaaaataccaaaata 26418939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 136
Target Start/End: Complemental strand, 18685896 - 18685765
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    ||||||||||||||||||||||||||| ||| |||||  ||||||        ||||  |||||||| ||||| || |||||||||||||||| || |||    
T  18685896 cacaactttttgtcccacgtacaagttgtctaaaatattaaaata-acattttgtccctcaaaaatcctataaaacaaaaaattactcaatgccataaaa 18685798  T
Q  104 agtttgtcttgtattgttttgtcttgtgatgta 136  Q
    | |||||| |||  |||| ||||||||| ||||    
T  18685797 aatttgtcctgtgctgttctgtcttgtgttgta 18685765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 32766587 - 32766650
Alignment:
Q  58 gtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaagtttgtcttgtattgtt 121  Q
    |||| ||||||||||||||| || |||||||| ||||||| |||||| |||||| ||| |||||    
T  32766587 gtcctccaaaaatcgtataaaacaaaaaattattcaatgccataaaaatttgtcctgtgttgtt 32766650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 3913490 - 3913588
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||| ||||||||||||| ||| |||||| |||||||        ||| ||||||||||||||| || ||| |||| ||||||| ||||||    
T  3913490 cacaactttttgttccacgtacaagttgtctaaaataccaaaatagcattttgctcc-ccaaaaatcgtataaaacaaaatattattcaatgccataaaa 3913588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 1247158 - 1247105
Alignment:
Q  63 ccaaaaatcgtataagaccaaaaattactcaatgctataaaagtttgtcttgta 116  Q
    ||||||||||||||| |  |||||||| ||||||| |||||| |||||||||||    
T  1247158 ccaaaaatcgtataaaataaaaaattattcaatgccataaaaatttgtcttgta 1247105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 6896228 - 6896183
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||||||||||||| ||| ||| || |||||||    
T  6896228 cacaactttttgtcccacgtacaagttgtctaaaacaccaaaatag 6896183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 37308715 - 37308670
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    |||||||||||||||||||||||| || ||| |||||| |||||||    
T  37308715 cacaactttttgtcccacgtacaaattgtctaaaataccaaaatag 37308670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 1247207 - 1247171
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaata 41  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  1247207 cacaactttttgtcccacgtacaagttgtctaaaata 1247171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 4641518 - 4641478
Alignment:
Q  64 caaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    |||||||||||||| || ||||||||||||||| |||||||    
T  4641518 caaaaatcgtataaaacaaaaaattactcaatggtataaaa 4641478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 37003898 - 37003942
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    |||||||||||||||||||||||| || ||| |||||| ||||||    
T  37003898 cacaactttttgtcccacgtacaaattgtctaaaataccaaaata 37003942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 102013 - 101911
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat 100  Q
    ||||||||||||||||||||||||||||||| ||| |||||| |||||||       ||||   ||||||||||||| || |||||||||||||||| ||    
T  102013 acatcacaactttttgtcccacgtacaagttgtctaaaataccaaaatag-cattttgtccctaaaaaatcgtataaaacaaaaaattactcaatgccat 101915  T
Q  101 aaaa 104  Q
    ||||    
T  101914 aaaa 101911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 19126 - 19224
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||        ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  19126 cacaactttttgtcccacgtacaagttgtctaaaataccaaaata-acattttgtccttcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 19224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 23635 - 23539
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||        ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  23635 cacaactttttgtcccacgtacaagttgtctaaaataccaaaata---acattgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 23539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 373000 - 373098
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaaa 104  Q
    ||||||||||||||||||||||||||| ||| |||||| ||||||        ||||  |||||||||||||| || |||||||||||||||| ||||||    
T  373000 cacaactttttgtcccacgtacaagttgtctaaaataccaaaata-tcattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgccataaaa 373098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 51499 - 51374
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctat-aaa 103  Q
    ||||||||||||||||||||||||||| ||| |||||  |||||||       ||||  |||||||||||||| || |||||||||||||||  || |||    
T  51499 cacaactttttgtcccacgtacaagttgtctaaaatatcaaaatag-cattttgtccctcaaaaatcgtataaaacaaaaaattactcaatgtcataaaa 51401  T
Q  104 agtttgtcttgtattgttttgtcttgt 130  Q
    | ||||||||||  |||| ||||||||    
T  51400 aatttgtcttgtgctgttctgtcttgt 51374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 2374 - 2419
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||||||||||||| ||| |||||| |||||||    
T  2374 cacaactttttgtcccacgtacaagttgtctaaaataccaaaatag 2419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 15232 - 15135
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatagnnnnnnngtccaccaaaaatcgtataagaccaaaaattactcaatgctataaa 103  Q
    |||||||||||||| |||||||||||| ||| |||||| |||||||       |||| ||||||||| ||||| || | |||||||||||||| |||||    
T  15232 cacaactttttgtctcacgtacaagttgtctaaaatactaaaatag-tattttgtcccccaaaaatcttataaaacaacaaattactcaatgccataaa 15135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5472 - 5520
Alignment:
Q  1 acatcacaactttttgtcccacgtacaagttatcttaaatacaaaaata 49  Q
    |||||||||||||||||||||| ||||||||  || |||||||||||||    
T  5472 acatcacaactttttgtcccacatacaagttgcctaaaatacaaaaata 5520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 1679 - 1724
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||||||||||||| ||| ||| || |||||||    
T  1679 cacaactttttgtcccacgtacaagttgtctaaaaaaccaaaatag 1724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 15417 - 15462
Alignment:
Q  5 cacaactttttgtcccacgtacaagttatcttaaatacaaaaatag 50  Q
    ||||||||||||||||| ||||||||| ||| |||||| |||||||    
T  15417 cacaactttttgtcccatgtacaagttgtctaaaataccaaaatag 15462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 12506 times since January 2019
Visitors: 8218