View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1390_high_150 (Length: 233)
Name: NF1390_high_150
Description: NF1390
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1390_high_150 |
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Alignment Details
Target: chr5 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 13879619 - 13879675
Alignment:
| Q |
1 |
caaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatc |
57 |
Q |
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| T |
13879619 |
caaaatcacagactcctcagtctccgtaaaatcccagagaacaagatcatcatcatc |
13879675 |
T |
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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 119
Target Start/End: Original strand, 13879697 - 13879734
Alignment:
| Q |
82 |
cagctcattggtgttgaaatagtgaatgagtcgaggag |
119 |
Q |
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| T |
13879697 |
cagctcattggtgttgaaatagcgaatgagtcgtggag |
13879734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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